Gene detail

Detail information of GWHGAAZE002974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004294910.1	7.8609E-159	PREDICTED: calcineurin B-like protein 3-like [Fragaria vesca subsp. vesca]
Swissprot	tr\|Q75LU8\|CNBL3_ORYSJ	6E-153	Calcineurin B-like protein 3
trEMBL	tr\|M5WJQ8\|M5WJQ8_PRUPE	3E-159	Uncharacterized protein {ECO:0000313\|EMBL:EMJ07040.1}
TAIR10	AT5G55990.1	2E-119	calcineurin B-like protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89477436	89483959	+
GWHAAZE00000001	mRNA	89477436	89483959	+
GWHAAZE00000001	exon	89477436	89477650	+
GWHAAZE00000001	exon	89479110	89479189	+
GWHAAZE00000001	exon	89479279	89479433	+
GWHAAZE00000001	exon	89480822	89480904	+
GWHAAZE00000001	exon	89481092	89481151	+
GWHAAZE00000001	exon	89481432	89481540	+
GWHAAZE00000001	exon	89481645	89481697	+
GWHAAZE00000001	exon	89483040	89483120	+
GWHAAZE00000001	exon	89483325	89483437	+
GWHAAZE00000001	exon	89483902	89483959	+
GWHAAZE00000001	five_prime_UTR	89477436	89477650	+
GWHAAZE00000001	five_prime_UTR	89479110	89479189	+
GWHAAZE00000001	five_prime_UTR	89479279	89479309	+
GWHAAZE00000001	CDS	89479310	89479433	+
GWHAAZE00000001	CDS	89480822	89480904	+
GWHAAZE00000001	CDS	89481092	89481151	+
GWHAAZE00000001	CDS	89481432	89481540	+
GWHAAZE00000001	CDS	89481645	89481697	+
GWHAAZE00000001	CDS	89483040	89483120	+
GWHAAZE00000001	CDS	89483325	89483437	+
GWHAAZE00000001	CDS	89483902	89483959	+

Transcript Sequence
>GWHTAAZE002978 ATCACTATCGTCATGTACGAACCGTGAAAAATTACAACCCCGCTTTTCCCTGAAAAAGTTTTTTTAGGTAAAGGAAAAAGAAAACAAATCAAAGAAACGAAAACGCAAGTTTACGTATAAATATCGTTGGCTTTTCAGTTTCGCCATTTTCTCTCTTCAATCGACAGTTGCAGACTCTTCTCTGAATTCATCCAACGTCCTTCTTCTCTCGAAAGAGTACAGATACAGTTTTAAGCTCTCCCATTGCTACCTTTTCATTTCTGTTCAGCTAGCAGAATCAGGAAATGGTCAAAAGGTATGGAGCGTTTTGATGTGCAGGAATTACCATGTTGCAGTGCTTAGAGGGGATCAAGCATTTATGTGCTTCCCTGCTGCAGTGCTGTGATCTTGATTTGTATAATCAGACAAGGGGCCTCGAAGATCCTGAAATTCTTGCAAGAGAGACAGTGTTTAGTGTAAGCGAAATAGAAGCTCTTTATGAGCTATTTAAGAAGATTAGCAGTGCAGTGATTGATGACGGTTTGATAAACAAGGAAGAGTTTCAATTGGCGCTATTTAAGACGAACAAAAAGGAGAGCTTGTTTGCTGATAGGGTGTTTGACTTGTTTGACACAAAGCACAATGGAATCCTGGGTTTTGAAGAGTTTGCCCGTGCACTTTCTGTATTTCATCCAAATGCGCCAATTGACGATAAGATTGAATTTTCCTTTCAACTATACGATCTCAAGCAGCAGGGTTTCATTGAGAGGCAAGAGGTGAAGCAAATGGTAGTGGCTACCCTTGCTGAGTCTGGGATGAATCTTTCAGATGATGTCATAGAGAGTATCATTGACAAGACATTTGAGGAAGCTGATACGAAACACGATGGGAAGATTGATAAGGAAGAATGGAGAAGTCTTGTTTTGCGCCATCCATCCCTTTTGAAGAATATGACCCTTCAATACCTGAAGGACATCACAACTACGTTCCCGAGTTTCGTATTTCACTCGAGAGTTGAGGATACTTGA

Network for GWHGAAZE002974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13833.7	EF-hand_8	64	109	0.00057
PF13499.7	EF-hand_7	122	187	7.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06268	PPP3R, CNB	MAPK signaling pathway	map04010
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Oocyte meiosis	map04114
		Cellular senescence	map04218
		C-type lectin receptor signaling pathway	map04625
		Natural killer cell mediated cytotoxicity	map04650
		T cell receptor signaling pathway	map04660
		Th1 and Th2 cell differentiation	map04658
		Th17 cell differentiation	map04659
		B cell receptor signaling pathway	map04662
		Glucagon signaling pathway	map04922
		Oxytocin signaling pathway	map04921
		Renin secretion	map04924
		Glutamatergic synapse	map04724
		Long-term potentiation	map04720
		Axon guidance	map04360
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.352
	SRR3591706	second leaf	35.182
	SRR3591707	mature leaf	33.879
	SRR3591708	Shoot apex	51.503
	SRR3591709	Stem	85.708
	SRR3591710	White floral bud	123.363
	SRR3591711	White flower	87.672
	SRR3591712	Green floral bud	117.644
	SRR3591713	Yellow flower	90.855
SRP173429	SRR8316895	Juvenile bud stage	36.209
	SRR8316896	Juvenile bud stage	54.627
	SRR8316897	Juvenile bud stage	33.151
	SRR8316894	Third green stage	28.564
	SRR8316900	Third green stage	88.036
	SRR8316901	Third green stage	82.419
	SRR8316898	Complete white stage	69.221
	SRR8316899	Complete white stage	134.658
	SRR8316903	Complete white stage	90.660
	SRR8316902	Silver flowering stage	42.540
	SRR8316904	Silver flowering stage	60.030
	SRR8316905	Silver flowering stage	30.727
	SRR8316906	Gold flowering stage	80.559
	SRR8316907	Gold flowering stage	76.871
	SRR8316908	Gold flowering stage	91.716
SRP132670	SRR6706286	Control	33.590
	SRR6706287	Light intensity 50%	46.356
	SRR6706288	Light intensity 20%	44.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.680
	CNS0095593	Slightly white alabastrum(diploid) 2	55.858
	CNS0095594	Slightly white alabastrum(diploid) 3	62.029
	CNS0095595	Whole white alabastrum(diploid) 2	67.598
	CNS0095596	Whole white alabastrum(diploid) 3	78.602
	CNS0095597	Whole white alabastrum(diploid) 4	69.647
	CNS0095598	Silvery flower (diploied) 1	47.082
	CNS0095599	Silvery flower (diploied) 2	44.010
	CNS0095600	Silvery flower (diploied) 3	60.883
	CNS0095601	Golden flower (diploid) 1	37.115
	CNS0095602	Golden flower (diploid) 2	49.515
	CNS0095603	Golden flower (diploid) 3	44.319
	CNS0095604	Slightly white alabastrum(tetraploid) 1	70.024
	CNS0095605	Slightly white alabastrum(tetraploid) 2	63.733
	CNS0095606	Slightly white alabastrum(tetraploid) 3	58.737
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.590
	CNS0095608	Whole white alabastrum(tetraploid) 2	59.058
	CNS0095609	Whole white alabastrum(tetraploid) 3	62.314
	CNS0095610	Silvery flower (tetraploid) 1	46.501
	CNS0095611	Silvery flower (tetraploid) 2	49.095
	CNS0095612	Silvery flower (tetraploid) 3	91.551
	CNS0095613	Golden flower (tetraploid) 1	51.983
	CNS0095614	Golden flower (tetraploid) 2	40.230
	CNS0095615	Golden flower (tetraploid) 3	61.562
CRA001975	CRR073297	Stem 1	29.118
	CRR073298	Stem 2	29.221
	CRR073299	Stem 3	19.974
	CRR073300	Leaf 1	32.337
	CRR073301	Leaf 2	26.573
	CRR073302	Leaf 3	30.605
	CRR073303	Juvenile bud 1	29.810
	CRR073304	Juvenile bud 2	32.590
	CRR073305	Juvenile bud 3	25.121
	CRR073306	Third green 1	20.297
	CRR073307	Third green 2	25.404
	CRR073308	Third green 3	22.911
	CRR073309	Second white 1	32.932
	CRR073310	Second white 2	31.426
	CRR073311	Second white 3	21.529
	CRR073312	Silver flowering 1	23.444
	CRR073313	Silver flowering 2	30.510
	CRR073314	Silver flowering 3	23.086
	CRR073315	Gold flowering 1	26.672
	CRR073316	Gold flowering 2	30.647
	CRR073317	Gold flowering 3	17.620
	CRR073318	Tawny withering 1	27.262
	CRR073319	Tawny withering 2	31.525
	CRR073320	Tawny withering 3	39.071