Gene detail

Detail information of GWHGAAZE002982

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009758560.1	9.6774E-178	PREDICTED: uridine kinase-like protein 3 isoform X2 [Nicotiana sylvestris]
COG	NP_929440.1	4E-40	hypothetical protein plu2180
Swissprot	tr\|Q8VYB2\|UKL3_ARATH	3E-168	Putative uracil phosphoribosyltransferase
trEMBL	tr\|D7UAT7\|D7UAT7_VITVI	7E-174	Uridine kinase {ECO:0000256\|RuleBase:RU003825}
TAIR10	AT1G55810.3	3E-130	uridine kinase-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89593758	89601957	+
GWHAAZE00000001	mRNA	89593758	89601957	+
GWHAAZE00000001	exon	89593758	89593911	+
GWHAAZE00000001	exon	89594090	89594181	+
GWHAAZE00000001	exon	89594564	89594633	+
GWHAAZE00000001	exon	89595313	89595431	+
GWHAAZE00000001	exon	89595833	89595929	+
GWHAAZE00000001	exon	89596317	89596492	+
GWHAAZE00000001	exon	89596685	89596868	+
GWHAAZE00000001	exon	89596950	89597025	+
GWHAAZE00000001	exon	89597631	89597715	+
GWHAAZE00000001	exon	89599262	89599456	+
GWHAAZE00000001	exon	89599808	89599868	+
GWHAAZE00000001	exon	89600599	89600659	+
GWHAAZE00000001	exon	89601009	89601102	+
GWHAAZE00000001	exon	89601206	89601278	+
GWHAAZE00000001	exon	89601452	89601534	+
GWHAAZE00000001	exon	89601808	89601957	+
GWHAAZE00000001	CDS	89593758	89593911	+
GWHAAZE00000001	CDS	89594090	89594181	+
GWHAAZE00000001	CDS	89594564	89594633	+
GWHAAZE00000001	CDS	89595313	89595431	+
GWHAAZE00000001	CDS	89595833	89595929	+
GWHAAZE00000001	CDS	89596317	89596492	+
GWHAAZE00000001	CDS	89596685	89596868	+
GWHAAZE00000001	CDS	89596950	89597025	+
GWHAAZE00000001	CDS	89597631	89597715	+
GWHAAZE00000001	CDS	89599262	89599456	+
GWHAAZE00000001	CDS	89599808	89599868	+
GWHAAZE00000001	CDS	89600599	89600659	+
GWHAAZE00000001	CDS	89601009	89601102	+
GWHAAZE00000001	CDS	89601206	89601278	+
GWHAAZE00000001	CDS	89601452	89601534	+
GWHAAZE00000001	CDS	89601808	89601957	+

Transcript Sequence
>GWHTAAZE002986 ATGGGTTCTAAAGCAGTCGAGGATTTGATAGAGGCTTCATCAGGGGTTCATTTTTCTGGATTCCACTTGAATGGCTTGGAGCCGAGAAATTCTCTGGATGAACAACCAACAACTTCAGTTACTGAAAATGTTCATAAGCAACCCTTTGTGATTGGAGTTGCTGGAGGTGCTGCATCAGGGAAGACCACTGTCTGTGATATGATTATTGAGCAGCTTCGAGATCAGCGTGTTGTTCTTGTTAACCAGGATTCCTTTTACCACAATTTGACTCCTGAAGAGCTGACAAGAGTTCATGAATACAACTTTGACCATCCTGATGCATTCAACACCGAGCAATTACTGTGTGCTATGGAGAAGTTGAAGCATGGGCAAGCAGTTGATATACCCAAATATGACTTCAAGAGTTACAAAAATAATGTCTTCCCTGCTAGAAGGGTTAATCCTTCAGATGTTATCCTTTTGGAAGGCATACTCATTTTCCATGATCCTCGCGTCCGAGATTTGATGAATATGAAGATCTTTGTTGATACAGCACTCGTTGACTTTTCTGTACCTTGCCCTAGCTCGGCGAGAGGATCCCAGTTTGTTCCTTCTATTCAGAGGAGAACGGCCACTGTCCAACGTGGACTTTGCATAATAGGGACTCAAGATGGGCCAAACAATCCCACTGGAAGAAGAAAAGAACCAAATAATTGGCCAAGTCATCAAGGGGTTCGAAGCAATTTATTTCTATATATGGACGATGGCTGCTGGCTTCTAGCCATGGCAGCCACCTGTGGGAGAGCAGCGGCAGTAACAGAGAACACAGAAGAGGAAGCAGCGACTGCTTCAACACTCCCCTTAGCCGTTGCTGCTTCATCTATTTTCTTATCAACACCATCAGAAAATAATTATCCATTTGAAAAAGAGTGTAGAGATTTTTGCAGAGTGTTTGACAGAGCTACCGGAGCAGTGAGAGAGGAAACAGATGCAGATGCTGATGTGCGCCTGGCAAGGAGAATAAGGCGTGATACAGTTGAAAAGGGTAGAGATATCGGTATGGTACTTGATCAGTATTCAAAGTTTGTGAAGGCTGCGTTCGATGACTTTATACTTCCAACAAAGAAGTATGCTGATATTATCATTCCCCGTGGAGGGGACAATCATGTAGCTATCGATTTGATTGTCCAACATATCCGAACAAAACTTGGTCAACATGACCTTTGTAAAATATACTCTAATCTGTATGTTATTCAATCAACTTTTCAGGTTGTTGAACATGGGCTGGGGCATCTGCCATTTACAGAAAAGCAGGTGATCACTCCAACTGATTCTGTATACACCGGTGTTGATTTCTGCAAGAGATTATGCGGTGTCTCTGTCATTAGAAGTGGTGAGAGCATGGAAAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATCCATAGAGAGGGTGACAACGGTCAGCAGCTGATTTATGAAAAACTGCCAGCAGACATATCTGACAGGCATGTGTTATTATTGGATCCTATCCTTGGCACAGGTAATTCAGCCGTTCAAGCTATTTCTTTACTTCTGAAGAAAGGAGTGCCTGAACCCAACATCATATTCCTTAATCTCATATCGGCACCTCAAGGAGTGCATGTGGTTTGCAAACGCTTCCCAAGAATAAAGATTGTCACATCTGAGATCGAAAGTGGTTTAAATAAAGATTTCCGGGTTATTCCTGGAATGGGCGAATTTGGAGACAGATATTTTGGCACAGACGATGATTGA

Network for GWHGAAZE002982

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00485.19	PRK	50	178	3.30E-22
PF00485.19	PRK	323	383	3.40E-14
PF14681.7	UPRTase	407	586	1.80E-58

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00876	udk, UCK	Metabolic pathways	map01100
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.558
	SRR3591706	second leaf	13.942
	SRR3591707	mature leaf	8.712
	SRR3591708	Shoot apex	18.169
	SRR3591709	Stem	32.269
	SRR3591710	White floral bud	21.085
	SRR3591711	White flower	20.727
	SRR3591712	Green floral bud	31.068
	SRR3591713	Yellow flower	15.662
SRP173429	SRR8316895	Juvenile bud stage	19.526
	SRR8316896	Juvenile bud stage	29.087
	SRR8316897	Juvenile bud stage	13.012
	SRR8316894	Third green stage	11.931
	SRR8316900	Third green stage	37.191
	SRR8316901	Third green stage	39.006
	SRR8316898	Complete white stage	12.484
	SRR8316899	Complete white stage	22.564
	SRR8316903	Complete white stage	15.195
	SRR8316902	Silver flowering stage	13.782
	SRR8316904	Silver flowering stage	19.294
	SRR8316905	Silver flowering stage	8.196
	SRR8316906	Gold flowering stage	23.625
	SRR8316907	Gold flowering stage	23.573
	SRR8316908	Gold flowering stage	23.809
SRP132670	SRR6706286	Control	5.305
	SRR6706287	Light intensity 50%	7.980
	SRR6706288	Light intensity 20%	8.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.626
	CNS0095593	Slightly white alabastrum(diploid) 2	24.201
	CNS0095594	Slightly white alabastrum(diploid) 3	34.413
	CNS0095595	Whole white alabastrum(diploid) 2	39.952
	CNS0095596	Whole white alabastrum(diploid) 3	48.731
	CNS0095597	Whole white alabastrum(diploid) 4	49.475
	CNS0095598	Silvery flower (diploied) 1	11.673
	CNS0095599	Silvery flower (diploied) 2	13.819
	CNS0095600	Silvery flower (diploied) 3	16.951
	CNS0095601	Golden flower (diploid) 1	10.659
	CNS0095602	Golden flower (diploid) 2	14.000
	CNS0095603	Golden flower (diploid) 3	13.056
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.564
	CNS0095605	Slightly white alabastrum(tetraploid) 2	31.109
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.416
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	47.301
	CNS0095609	Whole white alabastrum(tetraploid) 3	37.027
	CNS0095610	Silvery flower (tetraploid) 1	18.824
	CNS0095611	Silvery flower (tetraploid) 2	18.057
	CNS0095612	Silvery flower (tetraploid) 3	19.326
	CNS0095613	Golden flower (tetraploid) 1	13.897
	CNS0095614	Golden flower (tetraploid) 2	16.732
	CNS0095615	Golden flower (tetraploid) 3	16.425
CRA001975	CRR073297	Stem 1	15.934
	CRR073298	Stem 2	16.468
	CRR073299	Stem 3	12.604
	CRR073300	Leaf 1	20.470
	CRR073301	Leaf 2	17.133
	CRR073302	Leaf 3	17.596
	CRR073303	Juvenile bud 1	19.587
	CRR073304	Juvenile bud 2	13.586
	CRR073305	Juvenile bud 3	13.142
	CRR073306	Third green 1	8.765
	CRR073307	Third green 2	9.005
	CRR073308	Third green 3	8.684
	CRR073309	Second white 1	11.476
	CRR073310	Second white 2	8.338
	CRR073311	Second white 3	10.090
	CRR073312	Silver flowering 1	9.994
	CRR073313	Silver flowering 2	8.218
	CRR073314	Silver flowering 3	5.805
	CRR073315	Gold flowering 1	4.725
	CRR073316	Gold flowering 2	5.462
	CRR073317	Gold flowering 3	4.266
	CRR073318	Tawny withering 1	14.660
	CRR073319	Tawny withering 2	11.219
	CRR073320	Tawny withering 3	16.000