Gene detail

Detail information of GWHGAAZE002989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27242.3	1.06215E-34	unnamed protein product [Vitis vinifera]
trEMBL	tr\|A5BPD4\|A5BPD4_VITVI	7E-35	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN63708.1}
TAIR10	AT3G07040.1	1E-12	NB-ARC domain-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89663396	89665695	+
GWHAAZE00000001	mRNA	89663396	89665695	+
GWHAAZE00000001	exon	89663396	89663431	+
GWHAAZE00000001	exon	89663525	89663870	+
GWHAAZE00000001	exon	89663990	89664074	+
GWHAAZE00000001	exon	89665028	89665104	+
GWHAAZE00000001	exon	89665265	89665695	+
GWHAAZE00000001	CDS	89663396	89663431	+
GWHAAZE00000001	CDS	89663525	89663870	+
GWHAAZE00000001	CDS	89663990	89664074	+
GWHAAZE00000001	CDS	89665028	89665104	+
GWHAAZE00000001	CDS	89665265	89665695	+

Transcript Sequence
>GWHTAAZE002993 ATGCTCGCCTACCCAGGGGACATGGAAGGCAAGGAATATCAGTTTCATCATAGCATACTTGTTCGAGGAGCCTCTCATTTGTCTTATATGCATTGGGGGCAATGTCGTAATATTTCTTCCAAGATGGTCCAGATGGACAACATTAAGCAAAAGATGGACAATCGTAAGTACCTAGATTCATTTTTACCTAGTAGTAGCAGTAGAACTTATCTCTCGGAGGAAGGCTCAAGCTCTGGTTCAAGGAGTGTACATGAGGTGAGGCATGATCTTGACAATGAAGAAATAGTTGGCTTTCAAAATCCTCTTGAAGAACTTGGTCATCACTTGGTATGTGGTGATCCAAGGCAAGTGATAATATCCGTGGTTGGTTCTGATGGCACAGAAATTTTGTTCCTGAAGCAATTCCGACAATCTCATCAAGGCGTTGATATGTGGGCGAAACTGAGGAACTATCTGCAGATAAAAAGGTATTGTTCATCTCACCCTGTTGAGGTACCTAAGTTCGAGGAATATACGTTCCTCAAGACGTTGGACCTTAGGCAAACTGTGAAGGTAGACAGGTGTGGTAGAACTATAAAGGAGTTGGAAGAGCTGACCCAACCGTGGAAACTAGGGCTGCTACAGCTTAATAGAAAAGATGGGGTGAAGTTGTGTACATCTATTCAAAAGATGCGGAGTCTAATGACTCTCGATATTTCTTCAACAGGCAAAGAAGAGTTTCTTCATCTGGAAGAAATGCCTCGGCATCCTCAAAGTCTTCAGCGTTTGTATTTGAAAGGGGGTCTACAAAGGATCCCGGGATGGGTTCCCTTACTTCACAATCTGTTCAAGATTGGTCTGATGTGGTCAAGATTGTTGGCAAGCCCACTTGAGGCTCTTCAAGATCTGTCCAACTTGATGGAGCTTCATACGGACGCTTACGGTGGGCGCCAGTTGGTTTTTGAAGCTGGAAAGTTCAAGAAACTAAAGATTTAA

Network for GWHGAAZE002989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13457	RPM1, RPS3	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.104
	SRR3591706	second leaf	0.178
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.252
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.081
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.100
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	5.308
	SRR8316896	Juvenile bud stage	6.759
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	3.469
	SRR8316900	Third green stage	6.602
	SRR8316901	Third green stage	6.884
	SRR8316898	Complete white stage	1.201
	SRR8316899	Complete white stage	6.203
	SRR8316903	Complete white stage	3.928
	SRR8316902	Silver flowering stage	1.981
	SRR8316904	Silver flowering stage	3.390
	SRR8316905	Silver flowering stage	1.179
	SRR8316906	Gold flowering stage	2.478
	SRR8316907	Gold flowering stage	3.477
	SRR8316908	Gold flowering stage	0.779
SRP132670	SRR6706286	Control	2.101
	SRR6706287	Light intensity 50%	3.350
	SRR6706288	Light intensity 20%	2.969
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.724
	CNS0095593	Slightly white alabastrum(diploid) 2	5.973
	CNS0095594	Slightly white alabastrum(diploid) 3	2.683
	CNS0095595	Whole white alabastrum(diploid) 2	3.156
	CNS0095596	Whole white alabastrum(diploid) 3	3.286
	CNS0095597	Whole white alabastrum(diploid) 4	3.049
	CNS0095598	Silvery flower (diploied) 1	3.820
	CNS0095599	Silvery flower (diploied) 2	3.599
	CNS0095600	Silvery flower (diploied) 3	5.102
	CNS0095601	Golden flower (diploid) 1	3.174
	CNS0095602	Golden flower (diploid) 2	3.477
	CNS0095603	Golden flower (diploid) 3	3.766
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.011
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.068
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.160
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.082
	CNS0095610	Silvery flower (tetraploid) 1	0.003
	CNS0095611	Silvery flower (tetraploid) 2	0.003
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	7.251
	CRR073298	Stem 2	5.865
	CRR073299	Stem 3	1.018
	CRR073300	Leaf 1	6.505
	CRR073301	Leaf 2	4.690
	CRR073302	Leaf 3	1.607
	CRR073303	Juvenile bud 1	1.077
	CRR073304	Juvenile bud 2	0.287
	CRR073305	Juvenile bud 3	1.426
	CRR073306	Third green 1	0.114
	CRR073307	Third green 2	0.014
	CRR073308	Third green 3	0.146
	CRR073309	Second white 1	0.515
	CRR073310	Second white 2	0.442
	CRR073311	Second white 3	0.076
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.039
	CRR073314	Silver flowering 3	0.157
	CRR073315	Gold flowering 1	0.473
	CRR073316	Gold flowering 2	1.165
	CRR073317	Gold flowering 3	0.062
	CRR073318	Tawny withering 1	2.543
	CRR073319	Tawny withering 2	2.855
	CRR073320	Tawny withering 3	1.075