Gene detail

Detail information of GWHGAAZE002995

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276057.1	2.1614E-119	PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q3ECP0\|TFB1A_ARATH	2E-87	Probable RNA polymerase II transcription factor B subunit 1-1
trEMBL	tr\|D7UAQ6\|D7UAQ6_VITVI	8E-120	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39821.3}
TAIR10	AT1G55750.1	6E-74	BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89732090	89734622	+
GWHAAZE00000001	mRNA	89732090	89734622	+
GWHAAZE00000001	exon	89732090	89732221	+
GWHAAZE00000001	exon	89732768	89732959	+
GWHAAZE00000001	exon	89733078	89733191	+
GWHAAZE00000001	exon	89733364	89733441	+
GWHAAZE00000001	exon	89733951	89733998	+
GWHAAZE00000001	exon	89734328	89734396	+
GWHAAZE00000001	exon	89734479	89734622	+
GWHAAZE00000001	CDS	89732090	89732221	+
GWHAAZE00000001	CDS	89732768	89732959	+
GWHAAZE00000001	CDS	89733078	89733191	+
GWHAAZE00000001	CDS	89733364	89733441	+
GWHAAZE00000001	CDS	89733951	89733998	+
GWHAAZE00000001	CDS	89734328	89734396	+
GWHAAZE00000001	CDS	89734479	89734565	+
GWHAAZE00000001	three_prime_UTR	89734566	89734622	+

Transcript Sequence
>GWHTAAZE002999 ATGATAACGTCACTATTGAAGTTTGATGACATGGAAGGAGCCGAGAAGGTTCTAGAGGAATGGGAGTCGAGTCAGTCTTGCTATGATTTCCGGGTGCCAAACTACTTGATTGGGGTCTTTATTGTAGAAAAGGATCCTCGAGAGTACTTTGATTCTCAACAAGCTAATGCAGTAAAAACTTTGGGAGACACACTAGCCGGAACAAAGCAAATGAAACGTAGCATGAACACACATGAAGCATATGGCTCTTTGAGAGAGTTGATCTCTGAGATTAAAGCTGTAGGATTAAGTGATCCCGTAGTTAAACCCGAAGTTGCTCTTAAGGTTCTCGGTGGATTGACCCAAAATATTTCAAGCACCAAGTATCATTTTGGGAAGAATCCGCATGAGAGTGTTTTGGATAGATTACCAAGTATGACAAAAGAGGAACTTTTACATCATTGGACGTCTATTCAGGAGTTATTGAAGCATTTCTGGTCATCCTATCCTATTACAACTACATATCTCCATACTAAGGTAAACAAACTGAAGGATGCCATGTCACAAATTTATCCGAAGCTACAGGAGATCAAGGAATCAGTGCAGTCAGATTTCAGACATCAAGTTTCCCTCCTTGTGCAACCAATGCTTCAGGCTCTAGATGCGGCTTTTGCACATTATGATGCGGACTTACAGAAGAGATCAGCAAAGAGTGGAGAGAAACCCAATGGGTTTGTTTAGAACACTCTTGCCTTTATTACATCTTTTTTCAGTGATTTTATACAAATTGTACATTTA

Network for GWHGAAZE002995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03141	TFIIH1, GTF2H1, TFB1	Basal transcription factors	map03022
K03141	TFIIH1, GTF2H1, TFB1	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.596
	SRR3591706	second leaf	5.893
	SRR3591707	mature leaf	6.637
	SRR3591708	Shoot apex	11.317
	SRR3591709	Stem	12.778
	SRR3591710	White floral bud	10.645
	SRR3591711	White flower	15.067
	SRR3591712	Green floral bud	13.110
	SRR3591713	Yellow flower	12.844
SRP173429	SRR8316895	Juvenile bud stage	7.528
	SRR8316896	Juvenile bud stage	9.055
	SRR8316897	Juvenile bud stage	6.149
	SRR8316894	Third green stage	4.217
	SRR8316900	Third green stage	9.940
	SRR8316901	Third green stage	11.675
	SRR8316898	Complete white stage	4.035
	SRR8316899	Complete white stage	15.889
	SRR8316903	Complete white stage	6.488
	SRR8316902	Silver flowering stage	4.545
	SRR8316904	Silver flowering stage	6.851
	SRR8316905	Silver flowering stage	3.095
	SRR8316906	Gold flowering stage	9.110
	SRR8316907	Gold flowering stage	6.165
	SRR8316908	Gold flowering stage	8.831
SRP132670	SRR6706286	Control	3.169
	SRR6706287	Light intensity 50%	3.945
	SRR6706288	Light intensity 20%	3.655
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.541
	CNS0095593	Slightly white alabastrum(diploid) 2	8.522
	CNS0095594	Slightly white alabastrum(diploid) 3	6.597
	CNS0095595	Whole white alabastrum(diploid) 2	7.156
	CNS0095596	Whole white alabastrum(diploid) 3	5.868
	CNS0095597	Whole white alabastrum(diploid) 4	6.530
	CNS0095598	Silvery flower (diploied) 1	7.226
	CNS0095599	Silvery flower (diploied) 2	5.602
	CNS0095600	Silvery flower (diploied) 3	8.017
	CNS0095601	Golden flower (diploid) 1	6.949
	CNS0095602	Golden flower (diploid) 2	7.108
	CNS0095603	Golden flower (diploid) 3	6.718
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.276
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.724
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.603
	CNS0095610	Silvery flower (tetraploid) 1	10.687
	CNS0095611	Silvery flower (tetraploid) 2	7.923
	CNS0095612	Silvery flower (tetraploid) 3	7.031
	CNS0095613	Golden flower (tetraploid) 1	6.589
	CNS0095614	Golden flower (tetraploid) 2	10.669
	CNS0095615	Golden flower (tetraploid) 3	6.840
CRA001975	CRR073297	Stem 1	6.023
	CRR073298	Stem 2	5.095
	CRR073299	Stem 3	5.253
	CRR073300	Leaf 1	6.030
	CRR073301	Leaf 2	5.735
	CRR073302	Leaf 3	4.267
	CRR073303	Juvenile bud 1	6.698
	CRR073304	Juvenile bud 2	3.147
	CRR073305	Juvenile bud 3	6.528
	CRR073306	Third green 1	0.971
	CRR073307	Third green 2	1.166
	CRR073308	Third green 3	1.441
	CRR073309	Second white 1	0.853
	CRR073310	Second white 2	0.780
	CRR073311	Second white 3	1.165
	CRR073312	Silver flowering 1	0.606
	CRR073313	Silver flowering 2	1.807
	CRR073314	Silver flowering 3	1.299
	CRR073315	Gold flowering 1	1.237
	CRR073316	Gold flowering 2	3.958
	CRR073317	Gold flowering 3	1.600
	CRR073318	Tawny withering 1	6.677
	CRR073319	Tawny withering 2	6.973
	CRR073320	Tawny withering 3	5.102