Gene detail

Detail information of GWHGAAZE002996

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011095609.1	PREDICTED: enhancer of mRNA-decapping protein 4-like [Sesamum indicum]
Swissprot	tr\|Q9LTT9\|VCR_ARATH	Varicose-related protein
trEMBL	tr\|A0A068UZ36\|A0A068UZ36_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13661.1}
TAIR10	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89770296	89779823	+
GWHAAZE00000001	mRNA	89770296	89779823	+
GWHAAZE00000001	exon	89770296	89771162	+
GWHAAZE00000001	exon	89772735	89772784	+
GWHAAZE00000001	exon	89772865	89772997	+
GWHAAZE00000001	exon	89773178	89773396	+
GWHAAZE00000001	exon	89774695	89774823	+
GWHAAZE00000001	exon	89775056	89776678	+
GWHAAZE00000001	exon	89777046	89777405	+
GWHAAZE00000001	exon	89777487	89777606	+
GWHAAZE00000001	exon	89778191	89778361	+
GWHAAZE00000001	exon	89778459	89778623	+
GWHAAZE00000001	exon	89778742	89778861	+
GWHAAZE00000001	exon	89779524	89779823	+
GWHAAZE00000001	CDS	89770296	89771162	+
GWHAAZE00000001	CDS	89772735	89772784	+
GWHAAZE00000001	CDS	89772865	89772997	+
GWHAAZE00000001	CDS	89773178	89773396	+
GWHAAZE00000001	CDS	89774695	89774823	+
GWHAAZE00000001	CDS	89775056	89776678	+
GWHAAZE00000001	CDS	89777046	89777405	+
GWHAAZE00000001	CDS	89777487	89777606	+
GWHAAZE00000001	CDS	89778191	89778361	+
GWHAAZE00000001	CDS	89778459	89778623	+
GWHAAZE00000001	CDS	89778742	89778861	+
GWHAAZE00000001	CDS	89779524	89779823	+

Transcript Sequence
>GWHTAAZE003000 ATGGCTTCCCCTGGAAATTCAAATCAACCAGGTGGAGCACCGTTTGATATGCACAAGTTATTCAGACCTTCCACTGCAAACCCTAATTCCCAAAACCTTAACCTCACCAATTTGACTACCCAACCACCCCCTTCATTTCCCCCTTCCTCCTCCTATCCTCCACCCTCTTCAGCCTCTTATCCTCCACCCACTGGCCCTTACCCTTACCCTCCTCAACCCTCCTCCCCCTTCCACCACCAGTATCAATTGCCTCCTTATCCTCAGCAACAAGACCACCTTGCTAACTTGCACCACCAGAGATCCCTTCCTTATCCTACGCCCACTCTCCAACCCCCCAGTCCCCACCAATTCCCTCCCCAAACCACCAGCCCTGGACCTAACCCTAACCCTAACACCAACCCTGGGGCTAGGCTCATGGCCTTATTGAGTGCACCACCCTCCACTCTTGAAATTCCCCAACAACCTGCCATGCCAGTGGCTCCCCTTCAGCCTTCCAATTCTCGGGGTTCCGATTTTTCGACCCCACCCAGTGTCCCTATAATGCCTTTGGGGCCTCTAGGGATGAATGTCAACTTGGGGGGAATGGCGCATTCGGCTCCTATGCGAATGCCCAGCAGTAAGCTCCCCAAGGGGCGCCATTTGATCGGGGATCATGTGGTGTATGATATAGATGTTAGGTTGCCCGGTGAGGTGCAGCCACAGCTTGAAGTTACTCCGATTACCAGGTATACTTCGGACCCTGGCCTTGTTGTTGGCCGTCAAATTGCTGTCAATAAGACCTATATTTGTTATGGGCTGAAATTGGGAGCTATACGCGTGTTGAATATAAACACTGCACTGAGATCACTGCTTAAAGGTCTCTCTCAGAGGGTAACAGACATGGCTTTCTTTGCTGAAGATGTACACCTTTTGGCTAGTGCAAGTGTAGATGGAAGGGTTTATGTATGGAAGATTACTGAAGGCCCAGATGAGGAAGACAAGCCACAAATCACAGGAAAGATTGTTATTGCCCTTCAGATAGTCGGAGAAGGAGAATCTGTCCATCCCCAAGAAGTTCTAGTAGTTGGGATTGGAAGGAGTGTACTGAGGATTGACACTACAAAGGTTGGGAAAGGTGAAAAATATTCGGCAGAAGAACCTCTCAAATGTCCTGTTGACAAGCTTATTGATGGGGTACAGTTTGTTGGTAATCACGATGGAGAAGTGACTGATTTGTCCATGTGTCAATGGATGACCACCCGTTTGGTTTCTGCTTCAGTGGATGGCACGATAAAGATTTGGGAAGACCGCAAACTACAACCGATTGCTGTACTGAGGCCACATGATGGCCTACCTGTTAATTCTGTCACATTCCTGACTGCCCCTCAACGCCCAGATCACATTATACTTATCACAGGGGGTCCAATGAACCGTGAAATGAAGATATGGGCCTCAGAAAGTGATGAAGGATGGCTACTTCCTAGCGATGCTGATTCTTGGCATTGTACTCAGACATTGGAACTGGATAGTTCAGCTTGCCCAAGAGTCGATGAGGCGTTCTTTAATCAAGTAGTGGCATTATCTCAAGCGGGACTCCTTTTACTAGCAAATGCCAAGAAGAATGCTATATATGTTGTACATTTGGATTATGGTCCGAATCCTGCAGCAACCCGTATGGATTACATAGCAGAGTTTACAGTTACTATGCCGATTTTGAGTTTCACAGGGACGAGTGATATATTGCCACATGGTGAACAAATTGTTCAGGTTTACTGTGTCCAAACACAGGCCATTCAGCAGTATGCTTTGGACTTATCCCAGTGCTTACCTCCCCCTCTCGAGCACGGCTTTGAGAAGTCGGATTCAAGTGTTTCTCGTGATGTAGCCGGGTCCGACGTGTTTACTAGTTTGGAAACTTCTGGAGTGAAGCCCACTGAATTATCTTTTACTACCTCAGCACCCAAATCCTCTATGCTTGAAAATAGCTCTGAAAATGCACCGACTTCGAGACAAACATCGATCTCTGCTTCTTTTGAGGTGGCCATGTCTCAAGAATTTGCTACTTCGAGCATGGAATCGAAACCCGTTTCTACGCCAATGGTAGTTAACGACACTGATGTTACTTCTTTTGCATCACCACCTCTCCCTTTGAGTCCAAGGCTGTCCAGAAAACTCTCGGGTTTGAGAAGCCCATCAAGCAATTTTGAGCATGGTTCCCAAGTTAATGAGTCTGGTGGAGATCAAAAAATTATTGAATATTCTGTAGACAGACAAATGGAAACTGTTCAAAGAAACTTGTCCGACATCCCTTCCTTGGACGATGATCCAAGGAATAACGATGAAAAGAAAGTGGCACAAGATGATATTACTGCTGTACTTAATCAACCTATTAAGTTCAGGCACCCCACTCACCTTGTAACTCCTTCTGAGATATTGAGAGCTACCTCATCCTCGGACGCTAACCATGTTACCGAACGCAAGAATGAGGGAGAGCCGAATATTCAAGATGTGGTCGTTAACAATGATGCTCAAAATATTGAGGTGGAGGTTAAGGTTGTTGGTGAAACAAGAATTACGCAAAACGATGAAATGGGTTCTCCAGCCGAAATCCATAGTCTCGCTTCGGAACATATTGAGAAATCCTTTTGCTCCCAGGTCTCGGATCTTGGTATTGAGATGAGCAGAGAGTGCTGTCCTTTACCAGCCGAACGTTACAATGTAGATGAATCTAGGCCACTCAATGGGGCTAACGGAGTTGAGGCCATTGATCAGCCTTCAAGTGTTCAGGAAGAAGTTGTTGAATCCGCCAGGGATGTCTCTGGAAAGGTTGTAGAATCGGCAATGACTGCAACACTTCAACCGCCAGCATCGTCAAAAGGTAAAAAGCAGAAGGGGAAAACTCAGGGATCAGCCCCATCTTCCCCATCCCCAAGTGTGTTTAACTCGACAGATTCTTCCAGTGAACCAGGTGTCAGTTCAAACGTCCCCTCTGCAGATTCTTCTTTTCTGCAAATTCAGGCCATGCAGGATATGCTTAATCAGCTTATAGCCACACAAAAAGAAATGCAGAAGCAGATGACAGTGATGGTTACTGTGCCGGTTACCAAAGAAGGCAGAAGACTTGAGGCGGCCCTAGGACGGAGCATGGAGAAATCTGTCAAGGCTAATGCTGATGCTTTGTGGGCCCGTTTTCAAGAAGAGTTTGCAAAACAGGATAAGTTGGTACGAGATCGGACACAACAATTAACAAGTTTGATAACCAACTCCATCAACAAGGACTTGCCTGCACTGTTGGAGAAAACTATGAAAAAGGAATTCTCTGCAGTTGGACCATCTTTAGCACGCACCATAACTCCAGTTGTTGAGAAAACAATATCTACAGCTATAAATGAGGCCTTCCAGAGAGGCGTTGGTGATAAGGCTGCGAATCAACTGGAGAAATCAGTCAGTTCTAGACTCGAAGCTACTGTTGCCAGGCAAATTCAAGCACAATTTCAAACTTCTGGCAAACAGGCTCTTCAGGAATCATTGAAGTCGAGTTTTGAAGCTTCAGTTATCCCTGCATTTGAGATGTCTTGCAAGGCCATGTTTGATCAAGTTGATGCTACATTTCAAAAAGGAATGGTTGAACATACAAGTGCAGCTCAGCAGCAGTTTGAGTCCACAAATTCACCATTGGCTCATGCTTTAAGGGATGCCATTAATTCAGCATCAACTATCACTCAAACTTTAAGCGGTGAATTGGCTGATGGTCAGAGAAAGCTGATGGCCCTTGCAGTTGCAGGAGCAAATTCGAAGCCTGTGAACCCATTGGTTAGCCAACTTAGTAATGGACCTTTAGGTGGTTTGCATGAGAAGATTGAGGCAGATCCAACCAAAGAGCTGTCGAGATTGATATCTGAACATAAATATGAGGAGGCTTTCACTTCTGCTCTGCAAAGAAGTGATGTTACCATTGTATCTTGGTTATGCTCCCAGGTTGATTTGCAGGGTATATTGTTGATGAAGCCTATTCCTTTGGGGCAAGGGGTACTCCTCTCACTTCTGCAGCAGTTGGCCTGTGATTTTGGGAATGAAACAGCAAGAAAATTGGAGTGGATGTCAAATGTGGTGCTAGCCATAAACCCAGCCGATCCAATGATCGCGCTCCATGTACACCCCATCTTTGAACAGGTTTATCAGATACTCAGCCATCATCCTGGCCTTCCCACTATGGCTGCTCACGAGCTTTCAAAAATTCAGATTCTCATGTATATGATCCACTCCAAGCTGAAATGA

Network for GWHGAAZE002996

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0259

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16529.6	Ge1_WD40	236	323	1.00E-08
PF16529.6	Ge1_WD40	401	541	1.60E-08

Protein Sequence

>GWHPAAZE002998
MASPGNSNQPGGAPFDMHKLFRPSTANPNSQNLNLTNLTTQPPPSFPPSSSYPPPSSASYPPPTGPYPYPPQPSSPFHHQYQLPPYPQQQDHLANLHHQRSLPYPTPTLQPPSPHQFPPQTTSPGPNPNPNTNPGARLMALLSAPPSTLEIPQQPAMPVAPLQPSNSRGSDFSTPPSVPIMPLGPLGMNVNLGGMAHSAPMRMPSSKLPKGRHLIGDHVVYDIDVRLPGEVQPQLEVTPITRYTSDPGLVVGRQIAVNKTYICYGLKLGAIRVLNINTALRSLLKGLSQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGPDEEDKPQITGKIVIALQIVGEGESVHPQEVLVVGIGRSVLRIDTTKVGKGEKYSAEEPLKCPVDKLIDGVQFVGNHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKLQPIAVLRPHDGLPVNSVTFLTAPQRPDHIILITGGPMNREMKIWASESDEGWLLPSDADSWHCTQTLELDSSACPRVDEAFFNQVVALSQAGLLLLANAKKNAIYVVHLDYGPNPAATRMDYIAEFTVTMPILSFTGTSDILPHGEQIVQVYCVQTQAIQQYALDLSQCLPPPLEHGFEKSDSSVSRDVAGSDVFTSLETSGVKPTELSFTTSAPKSSMLENSSENAPTSRQTSISASFEVAMSQEFATSSMESKPVSTPMVVNDTDVTSFASPPLPLSPRLSRKLSGLRSPSSNFEHGSQVNESGGDQKIIEYSVDRQMETVQRNLSDIPSLDDDPRNNDEKKVAQDDITAVLNQPIKFRHPTHLVTPSEILRATSSSDANHVTERKNEGEPNIQDVVVNNDAQNIEVEVKVVGETRITQNDEMGSPAEIHSLASEHIEKSFCSQVSDLGIEMSRECCPLPAERYNVDESRPLNGANGVEAIDQPSSVQEEVVESARDVSGKVVESAMTATLQPPASSKGKKQKGKTQGSAPSSPSPSVFNSTDSSSEPGVSSNVPSADSSFLQIQAMQDMLNQLIATQKEMQKQMTVMVTVPVTKEGRRLEAALGRSMEKSVKANADALWARFQEEFAKQDKLVRDRTQQLTSLITNSINKDLPALLEKTMKKEFSAVGPSLARTITPVVEKTISTAINEAFQRGVGDKAANQLEKSVSSRLEATVARQIQAQFQTSGKQALQESLKSSFEASVIPAFEMSCKAMFDQVDATFQKGMVEHTSAAQQQFESTNSPLAHALRDAINSASTITQTLSGELADGQRKLMALAVAGANSKPVNPLVSQLSNGPLGGLHEKIEADPTKELSRLISEHKYEEAFTSALQRSDVTIVSWLCSQVDLQGILLMKPIPLGQGVLLSLLQQLACDFGNETARKLEWMSNVVLAINPADPMIALHVHPIFEQVYQILSHHPGLPTMAAHELSKIQILMYMIHSKLK

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.264
	SRR3591706	second leaf	20.249
	SRR3591707	mature leaf	24.251
	SRR3591708	Shoot apex	27.455
	SRR3591709	Stem	33.421
	SRR3591710	White floral bud	37.656
	SRR3591711	White flower	51.082
	SRR3591712	Green floral bud	33.858
	SRR3591713	Yellow flower	35.696
SRP173429	SRR8316895	Juvenile bud stage	17.016
	SRR8316896	Juvenile bud stage	26.357
	SRR8316897	Juvenile bud stage	11.006
	SRR8316894	Third green stage	10.446
	SRR8316900	Third green stage	22.966
	SRR8316901	Third green stage	21.875
	SRR8316898	Complete white stage	5.498
	SRR8316899	Complete white stage	23.043
	SRR8316903	Complete white stage	20.519
	SRR8316902	Silver flowering stage	10.584
	SRR8316904	Silver flowering stage	16.871
	SRR8316905	Silver flowering stage	8.067
	SRR8316906	Gold flowering stage	25.902
	SRR8316907	Gold flowering stage	25.894
	SRR8316908	Gold flowering stage	28.159
SRP132670	SRR6706286	Control	29.772
	SRR6706287	Light intensity 50%	28.872
	SRR6706288	Light intensity 20%	30.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.830
	CNS0095593	Slightly white alabastrum(diploid) 2	14.998
	CNS0095594	Slightly white alabastrum(diploid) 3	14.541
	CNS0095595	Whole white alabastrum(diploid) 2	12.402
	CNS0095596	Whole white alabastrum(diploid) 3	9.387
	CNS0095597	Whole white alabastrum(diploid) 4	11.721
	CNS0095598	Silvery flower (diploied) 1	22.608
	CNS0095599	Silvery flower (diploied) 2	16.594
	CNS0095600	Silvery flower (diploied) 3	33.861
	CNS0095601	Golden flower (diploid) 1	15.887
	CNS0095602	Golden flower (diploid) 2	40.766
	CNS0095603	Golden flower (diploid) 3	35.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.627
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.983
	CNS0095606	Slightly white alabastrum(tetraploid) 3	34.491
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.872
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.603
	CNS0095610	Silvery flower (tetraploid) 1	33.566
	CNS0095611	Silvery flower (tetraploid) 2	34.438
	CNS0095612	Silvery flower (tetraploid) 3	32.420
	CNS0095613	Golden flower (tetraploid) 1	18.467
	CNS0095614	Golden flower (tetraploid) 2	28.826
	CNS0095615	Golden flower (tetraploid) 3	43.313
CRA001975	CRR073297	Stem 1	42.442
	CRR073298	Stem 2	38.633
	CRR073299	Stem 3	32.171
	CRR073300	Leaf 1	40.546
	CRR073301	Leaf 2	34.296
	CRR073302	Leaf 3	23.112
	CRR073303	Juvenile bud 1	30.356
	CRR073304	Juvenile bud 2	17.136
	CRR073305	Juvenile bud 3	48.428
	CRR073306	Third green 1	19.916
	CRR073307	Third green 2	13.907
	CRR073308	Third green 3	21.113
	CRR073309	Second white 1	20.487
	CRR073310	Second white 2	26.205
	CRR073311	Second white 3	34.445
	CRR073312	Silver flowering 1	33.950
	CRR073313	Silver flowering 2	39.240
	CRR073314	Silver flowering 3	30.340
	CRR073315	Gold flowering 1	15.336
	CRR073316	Gold flowering 2	28.009
	CRR073317	Gold flowering 3	19.430
	CRR073318	Tawny withering 1	28.357
	CRR073319	Tawny withering 2	21.610
	CRR073320	Tawny withering 3	27.412