Gene detail

Detail information of GWHGAAZE002999

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630343.1	0	PREDICTED: cytochrome c oxidase assembly protein COX15 [Nicotiana tomentosiformis]
COG	YP_004695545.1	2E-94	Heme A synthase
Swissprot	tr\|Q9FKT8\|COX15_ARATH	0	Cytochrome c oxidase assembly protein COX15
trEMBL	tr\|K4D4W1\|K4D4W1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g007000.1.1}
TAIR10	AT5G56090.1	0	cytochrome c oxidase 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89839282	89841343	+
GWHAAZE00000001	mRNA	89839282	89841343	+
GWHAAZE00000001	exon	89839282	89839556	+
GWHAAZE00000001	exon	89839801	89840026	+
GWHAAZE00000001	exon	89840128	89840373	+
GWHAAZE00000001	exon	89840482	89840592	+
GWHAAZE00000001	exon	89840877	89841008	+
GWHAAZE00000001	exon	89841173	89841343	+
GWHAAZE00000001	CDS	89839282	89839556	+
GWHAAZE00000001	CDS	89839801	89840026	+
GWHAAZE00000001	CDS	89840128	89840373	+
GWHAAZE00000001	CDS	89840482	89840592	+
GWHAAZE00000001	CDS	89840877	89841008	+
GWHAAZE00000001	CDS	89841173	89841343	+

Transcript Sequence
>GWHTAAZE003003 ATGTCCACATCAGCAGCATCTGTCTGTAAGGAAAATAAGGAAGGATTGAAGTTCCTAGTTACTGCAGGTCCCCGTGCTCAGAAAATGGTTGGGATATGGCTCTTTGCATCTGCTGCATGGGTGTTTAGCATGGTTTTACTTGGTGGTATCACACGACTAACCCGATCTGGTCTTTCAATGACTGACTGGAAATTCACTGGTAGCCTTCCTCCTCTATCAGATGAAGAGTGGTTGGCTGAGTTTGAGAAATATAAACAATCACCGGAGTTCAAGCGAGTAAACAAAGGGATGAGTATTGATGATTTCAAGTTTATATATTGGATGGAATATGCTCATCGGATGTGGGGAAGGGCACTTGGTATCATGTTTGCCCTTCCATTTTCATATTTCCTCCGTAAGGGATATATTACTCCACAACTTGGAGTTAGACTTTGTTCCCTATTTGCTCTTGGTGCCGGGCAGGGACTAATTGGCTGGTGGATGGTTAAAAGTGGCTTAGAGGAACCGGCATCAGAGTATGTTCAACCCAGAGTAAGCCCTTACCGCCTTGCGGCTCATCTCACTTCGGCCTTTATTATTTACTGTGGGCTCTTTTGGACTGCTCTTACAGTCGTTATGCCCAAACCACCGGCTGAATCAGTAGTTTGGGTTCTTGGGGCTGCTAAAGTTAAGAGAGTTGCCCTTCCTGTTAGCATCATTGTTGGCATCACCGCTGTCTCTGGAGCCTTTGTTGCAGGAAATGATGCTGGCCATGCATTTAATACTTTTCCAAAGATGGGTGATTCATGGATTCCGGATGATATTTTTAGTATGAAGCCGCTTATGCGCAACTTTTTTGAGAATACGTCAACAGTGCAGCTTGACCATCGTATCCTTGCAACTGTGACGTTGATTTCAATTGGTGGCTTATGGTGGTCTACCAGAAAACTAGACATACATCCTGCCATAAGATCTTTAATTGGAAGCATCATGGGCATGGCAGCTCTTCAGGTCACATTGGGGATATCAACTCTTCTATCATATGTTCCGGTTTCACTTGGCACAGCTCACCAGGCTGGAGCTTTGACTCTTTTAACGCTTATGATCCTGCTCAATCACACTGTCCGGCGTCCTTCAGCACTGCTTCTCAAGTCGCTGCCTTCAATTGCAAAAACAACGTGA

Network for GWHGAAZE002999

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02628.16	COX15-CtaA	32	362	8.60E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02259	COX15, ctaA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Oxidative phosphorylation	map00190
		Porphyrin and chlorophyll metabolism	map00860
		Two-component system	map02020
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006784	biological_process	heme A biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0016021	cellular_component	integral component of membrane
GO:0016020	cellular_component	membrane
GO:0016627	molecular_function	oxidoreductase activity, acting on the CH-CH group of donors

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.732
	SRR3591706	second leaf	11.749
	SRR3591707	mature leaf	7.560
	SRR3591708	Shoot apex	17.238
	SRR3591709	Stem	11.194
	SRR3591710	White floral bud	12.394
	SRR3591711	White flower	16.923
	SRR3591712	Green floral bud	15.796
	SRR3591713	Yellow flower	11.640
SRP173429	SRR8316895	Juvenile bud stage	12.082
	SRR8316896	Juvenile bud stage	15.029
	SRR8316897	Juvenile bud stage	5.323
	SRR8316894	Third green stage	6.352
	SRR8316900	Third green stage	18.459
	SRR8316901	Third green stage	17.226
	SRR8316898	Complete white stage	7.541
	SRR8316899	Complete white stage	18.317
	SRR8316903	Complete white stage	10.550
	SRR8316902	Silver flowering stage	5.360
	SRR8316904	Silver flowering stage	7.531
	SRR8316905	Silver flowering stage	3.551
	SRR8316906	Gold flowering stage	11.738
	SRR8316907	Gold flowering stage	10.747
	SRR8316908	Gold flowering stage	13.470
SRP132670	SRR6706286	Control	11.220
	SRR6706287	Light intensity 50%	12.477
	SRR6706288	Light intensity 20%	13.017
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.083
	CNS0095593	Slightly white alabastrum(diploid) 2	11.473
	CNS0095594	Slightly white alabastrum(diploid) 3	10.225
	CNS0095595	Whole white alabastrum(diploid) 2	10.548
	CNS0095596	Whole white alabastrum(diploid) 3	11.031
	CNS0095597	Whole white alabastrum(diploid) 4	7.538
	CNS0095598	Silvery flower (diploied) 1	13.267
	CNS0095599	Silvery flower (diploied) 2	10.284
	CNS0095600	Silvery flower (diploied) 3	16.856
	CNS0095601	Golden flower (diploid) 1	10.958
	CNS0095602	Golden flower (diploid) 2	15.376
	CNS0095603	Golden flower (diploid) 3	15.664
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.980
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.727
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.982
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.747
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.060
	CNS0095610	Silvery flower (tetraploid) 1	13.076
	CNS0095611	Silvery flower (tetraploid) 2	14.037
	CNS0095612	Silvery flower (tetraploid) 3	9.626
	CNS0095613	Golden flower (tetraploid) 1	5.519
	CNS0095614	Golden flower (tetraploid) 2	12.707
	CNS0095615	Golden flower (tetraploid) 3	11.179
CRA001975	CRR073297	Stem 1	19.293
	CRR073298	Stem 2	18.885
	CRR073299	Stem 3	16.348
	CRR073300	Leaf 1	19.746
	CRR073301	Leaf 2	18.157
	CRR073302	Leaf 3	19.878
	CRR073303	Juvenile bud 1	22.227
	CRR073304	Juvenile bud 2	15.779
	CRR073305	Juvenile bud 3	20.049
	CRR073306	Third green 1	8.986
	CRR073307	Third green 2	8.453
	CRR073308	Third green 3	6.993
	CRR073309	Second white 1	11.562
	CRR073310	Second white 2	9.635
	CRR073311	Second white 3	9.591
	CRR073312	Silver flowering 1	4.653
	CRR073313	Silver flowering 2	6.527
	CRR073314	Silver flowering 3	7.052
	CRR073315	Gold flowering 1	14.474
	CRR073316	Gold flowering 2	17.656
	CRR073317	Gold flowering 3	15.290
	CRR073318	Tawny withering 1	17.994
	CRR073319	Tawny withering 2	14.008
	CRR073320	Tawny withering 3	15.567