Gene detail

Detail information of GWHGAAZE003002

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI39810.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P20025\|MYB38_MAIZE	3E-59	Myb-related protein Zm38
trEMBL	tr\|D7UAP5\|D7UAP5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39810.3}
TAIR10	AT5G56110.1	1E-90	myb domain protein 103

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	89867935	89869017	+
GWHAAZE00000001	mRNA	89867935	89869017	+
GWHAAZE00000001	exon	89867935	89868197	+
GWHAAZE00000001	exon	89868286	89869017	+
GWHAAZE00000001	CDS	89867935	89868197	+
GWHAAZE00000001	CDS	89868286	89868988	+
GWHAAZE00000001	three_prime_UTR	89868989	89869017	+

Transcript Sequence
>GWHTAAZE003006 ATGGGTCGAATTCCGTGTTGTGAGAAGGAGAATGTAAAGAGGGGTCAGTGGACCCCTGAAGAAGACAACAAACTCTCTTCCTACATCTCTCAACATGGCACCCGTAACTGGCGCCTCATCCCCAAGAATGCCGGCCTACAGAGATGTGGAAAGAGTTGTAGGCTTCGTTGGACTAACTACCTCCGCCCTGACCTAAAGCATGGCCAGTTTTCAGATTCAGAAGAACAAGCCATTGTCAAGCTTCATTCAGTTTTTGGCAACCGATGGTCACTAATTGCTGCTCAGCTTCCAGGCCGAACTGACAATGATGTTAAGAACCACTGGAATACCAAGCTCAAAAAGAAGCTTTCAGGCATGGGAATCGATCCCGTTACCCACAAGCCCTTTTCCCACCTAATGGCAGAGATTGCCACACTAGCACCCCCACAGGTAGGTAACCTGGCTGAAGCAGCTCTCGGCTGCTTCAAAGATGAAATGCTCCACCTTCTTACAAAGAAGCGCGTTGAGGTCCATCTGCAACAATCTGGTGCAGCACATAACCCTTCAGCTAATACTTTAATTACTGGTAAGCATGATGAAAAAGAAGATACCATTGAGAGAATCAAGCTCGGATTGTCAAAGGCCATACAAGAGCCCAACACTCTGCCCTTGAGCAAACACTGGGGCTCGAATATAGGAGCATCTGTGAGTTTTGCTGAGGCCTGCTGTGCCTTTCCTTCTGGATTTCACTGTGGCCCTTCATCATTCGGCAATGAAGAGGATGAGTCGCCGTGGAACCAAAGTACGTGCACCGGAAGCACATGCACTGCAGGAGATCAGAACTGCCGGTTGAATGGGAAAAATAAGGAGGATAATGGAGAGGAATCCGAGGGTGGAAAAGAAACGAGAGATGGTAGCAGCATTTTCAATTCAGACTGCGTCTTGTGGGATTTACCCTCTGATGATCTTATCAATCCTATGGTCTGAAGAAGCTTACATTGCATTTACATCTCATA

Network for GWHGAAZE003002

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	3.00E-15
PF00249.32	Myb_DNA-binding	68	110	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.254
	SRR3591706	second leaf	3.835
	SRR3591707	mature leaf	3.258
	SRR3591708	Shoot apex	2.783
	SRR3591709	Stem	1.695
	SRR3591710	White floral bud	2.533
	SRR3591711	White flower	3.472
	SRR3591712	Green floral bud	1.965
	SRR3591713	Yellow flower	2.596
SRP173429	SRR8316895	Juvenile bud stage	0.280
	SRR8316896	Juvenile bud stage	0.754
	SRR8316897	Juvenile bud stage	0.221
	SRR8316894	Third green stage	0.149
	SRR8316900	Third green stage	0.182
	SRR8316901	Third green stage	0.539
	SRR8316898	Complete white stage	0.354
	SRR8316899	Complete white stage	0.859
	SRR8316903	Complete white stage	0.307
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.174
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	0.402
	SRR8316907	Gold flowering stage	0.427
	SRR8316908	Gold flowering stage	1.100
SRP132670	SRR6706286	Control	0.540
	SRR6706287	Light intensity 50%	0.338
	SRR6706288	Light intensity 20%	0.285
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.196
	CNS0095593	Slightly white alabastrum(diploid) 2	0.778
	CNS0095594	Slightly white alabastrum(diploid) 3	1.185
	CNS0095595	Whole white alabastrum(diploid) 2	0.211
	CNS0095596	Whole white alabastrum(diploid) 3	0.287
	CNS0095597	Whole white alabastrum(diploid) 4	0.366
	CNS0095598	Silvery flower (diploied) 1	0.615
	CNS0095599	Silvery flower (diploied) 2	0.481
	CNS0095600	Silvery flower (diploied) 3	0.553
	CNS0095601	Golden flower (diploid) 1	0.344
	CNS0095602	Golden flower (diploid) 2	0.541
	CNS0095603	Golden flower (diploid) 3	0.358
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.345
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.555
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.454
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.396
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.213
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.215
	CNS0095610	Silvery flower (tetraploid) 1	0.528
	CNS0095611	Silvery flower (tetraploid) 2	0.095
	CNS0095612	Silvery flower (tetraploid) 3	0.272
	CNS0095613	Golden flower (tetraploid) 1	0.276
	CNS0095614	Golden flower (tetraploid) 2	0.373
	CNS0095615	Golden flower (tetraploid) 3	0.113
CRA001975	CRR073297	Stem 1	0.979
	CRR073298	Stem 2	0.492
	CRR073299	Stem 3	0.480
	CRR073300	Leaf 1	0.391
	CRR073301	Leaf 2	0.631
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.055
	CRR073306	Third green 1	0.141
	CRR073307	Third green 2	0.080
	CRR073308	Third green 3	0.139
	CRR073309	Second white 1	0.646
	CRR073310	Second white 2	0.512
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.152
	CRR073313	Silver flowering 2	0.598
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.155
	CRR073316	Gold flowering 2	0.444
	CRR073317	Gold flowering 3	0.148
	CRR073318	Tawny withering 1	0.378
	CRR073319	Tawny withering 2	0.254
	CRR073320	Tawny withering 3	0.408