Detail information of GWHGAAZE003011


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009620227.10PREDICTED: actin-related protein 8 [Nicotiana tomentosiformis]
COGYP_003266114.10.0000001actin/actin family protein
Swissprottr|Q9FKT0|ARP8_ARATH0Actin-related protein 8
trEMBLtr|M1C055|M1C055_SOLTU0Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400056960}
TAIR10AT5G56180.11E-150actin-related protein 8

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene8999709390013136-
GWHAAZE00000001mRNA8999709390013136-
GWHAAZE00000001exon9001276690013136-
GWHAAZE00000001exon9001141790011502-
GWHAAZE00000001exon9001050690010576-
GWHAAZE00000001exon9001027690010343-
GWHAAZE00000001exon9000992490009985-
GWHAAZE00000001exon9000897090009067-
GWHAAZE00000001exon9000418290004263-
GWHAAZE00000001exon9000374990003891-
GWHAAZE00000001exon9000309990003142-
GWHAAZE00000001exon9000033990000446-
GWHAAZE00000001exon8999828089998413-
GWHAAZE00000001exon8999760389997752-
GWHAAZE00000001exon8999709389997193-
GWHAAZE00000001CDS9001276690013136-
GWHAAZE00000001CDS9001141790011502-
GWHAAZE00000001CDS9001050690010576-
GWHAAZE00000001CDS9001027690010343-
GWHAAZE00000001CDS9000992490009985-
GWHAAZE00000001CDS9000897090009067-
GWHAAZE00000001CDS9000418290004263-
GWHAAZE00000001CDS9000374990003891-
GWHAAZE00000001CDS9000309990003142-
GWHAAZE00000001CDS9000033990000446-
GWHAAZE00000001CDS8999828089998413-
GWHAAZE00000001CDS8999760389997752-
GWHAAZE00000001CDS8999709389997193-
Transcript Sequence

Network for GWHGAAZE003011

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.34F-box44874.70E-07
PF00022.20Actin1943454.70E-13
PF00022.20Actin3734604.60E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf39.365
SRR3591706second leaf35.635
SRR3591707mature leaf43.118
SRR3591708Shoot apex24.869
SRR3591709Stem57.466
SRR3591710White floral bud74.118
SRR3591711White flower57.669
SRR3591712Green floral bud39.834
SRR3591713Yellow flower54.100
SRP173429 SRR8316895Juvenile bud stage 20.794
SRR8316896Juvenile bud stage 26.593
SRR8316897Juvenile bud stage 11.647
SRR8316894Third green stage 11.957
SRR8316900Third green stage 30.419
SRR8316901Third green stage 32.965
SRR8316898Complete white stage 40.168
SRR8316899Complete white stage 63.881
SRR8316903Complete white stage 55.090
SRR8316902Silver flowering stage28.387
SRR8316904Silver flowering stage43.936
SRR8316905Silver flowering stage16.418
SRR8316906Gold flowering stage 54.090
SRR8316907Gold flowering stage 55.311
SRR8316908Gold flowering stage 50.239
SRP132670SRR6706286Control48.100
SRR6706287Light intensity 50%47.137
SRR6706288Light intensity 20%49.768
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.772
CNS0095593Slightly white alabastrum(diploid) 223.652
CNS0095594Slightly white alabastrum(diploid) 320.478
CNS0095595Whole white alabastrum(diploid) 221.401
CNS0095596Whole white alabastrum(diploid) 318.040
CNS0095597Whole white alabastrum(diploid) 423.053
CNS0095598Silvery flower (diploied) 130.877
CNS0095599Silvery flower (diploied) 232.417
CNS0095600Silvery flower (diploied) 351.115
CNS0095601Golden flower (diploid) 128.851
CNS0095602Golden flower (diploid) 245.533
CNS0095603Golden flower (diploid) 344.335
CNS0095604Slightly white alabastrum(tetraploid) 129.537
CNS0095605Slightly white alabastrum(tetraploid) 224.359
CNS0095606Slightly white alabastrum(tetraploid) 338.092
CNS0095607Whole white alabastrum(tetraploid) 124.867
CNS0095608Whole white alabastrum(tetraploid) 224.412
CNS0095609Whole white alabastrum(tetraploid) 335.820
CNS0095610Silvery flower (tetraploid) 161.822
CNS0095611Silvery flower (tetraploid) 263.589
CNS0095612Silvery flower (tetraploid) 357.769
CNS0095613Golden flower (tetraploid) 131.823
CNS0095614Golden flower (tetraploid) 250.714
CNS0095615Golden flower (tetraploid) 345.174
CRA001975CRR073297Stem 123.874
CRR073298Stem 223.282
CRR073299Stem 321.179
CRR073300Leaf 132.456
CRR073301Leaf 229.414
CRR073302Leaf 325.935
CRR073303Juvenile bud 133.408
CRR073304Juvenile bud 241.396
CRR073305Juvenile bud 338.425
CRR073306Third green 135.878
CRR073307Third green 229.135
CRR073308Third green 331.913
CRR073309Second white 122.085
CRR073310Second white 236.027
CRR073311Second white 321.282
CRR073312Silver flowering 114.034
CRR073313Silver flowering 213.491
CRR073314Silver flowering 318.778
CRR073315Gold flowering 114.129
CRR073316Gold flowering 218.716
CRR073317Gold flowering 316.541
CRR073318Tawny withering 121.263
CRR073319Tawny withering 219.774
CRR073320Tawny withering 318.168