Gene detail

Detail information of GWHGAAZE003013

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13640.1	3.07043E-85	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9SLD4\|ZAT11_ARATH	8E-22	Zinc finger protein ZAT11
trEMBL	tr\|A0A068UYN1\|A0A068UYN1_COFCA	1E-85	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13640.1}
TAIR10	AT5G56200.1	1E-16	C2H2 type zinc finger transcription factor family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90094623	90095882	+
GWHAAZE00000001	mRNA	90094623	90095882	+
GWHAAZE00000001	exon	90094623	90095882	+
GWHAAZE00000001	CDS	90094623	90095882	+

Transcript Sequence
>GWHTAAZE003017 ATGCGGGTCTGTCCAGAATGCAACAAAGAGTTCAGCTCCGGTAAAGCTCTGGGGGGTCATATGAGAATCCATGTTCAGGTCAAGAAAACAGAGCATCTCCGATCAGAAAACAGAGCTTCACCGATCAATCATCAAAACAATGAAAAACCGATTTGTTCGCTTTGTGGTAAGAATTTTCCGTCGATGAAATCTTTATTTGGTCACATGAGGTGCCACCCGGAGAGGGAATGGAGGGGGATTCAACCTCCTGCTCCAGAGGCCAGGAGCAGCCCATCTCCCTCTTTTTCCGGAGAGGATCAGGTTGATTTAATGCAGTCTCTGTCGTTCTGGTCCGTCACCGGCCGGAGGGGGCGAAAGGCCACCGCTCCTTCGAGCTCCGACGAAGACGAAGACGAAGACGAAGACGAGGAGTTTCACAATGCTGCCGGAGAGTTACTGCTGTTAGCTCAGATGGATTCAATTGGGTCTAATATGACAGAGAAGCAAATAGATGAAGAACCAGAAGCCATATATAGCAATGGGAATTCAAAAAATGACCAAATTGAGGAACCCAACAGTGTTTATCGATCGACGAAGCGATCAATTGAGGGGTTTGAGGAAGATAGAGAGAGAAGGGATTGTTATTCGCCAGTGAAGAAGATGAGGGTTAATGAAACATGGTCCCCTGTTTTTACAGATAGTGATAGTAAAAGCTGCTCTGAGGAGGAACTGAGTTACAGATACAAAGAGAGTGTTAAGATTAAGAAGAGGAAGAAGATGAAATTGACAGTGGATTTAGCTTCATTTAATCCGATTAATCAAAACACATTTGATTCTTCGGTTGATAAATATAAATGTAGCACATGTAACAAGTGCTTCCCAACTTTTCAAGCACTTGGTGGACATAGGTCAAGCCACAACAAATTCAAGATTACCACCATTAACGCCATTGATGAATCTTCATGTGCAGCAGCTCCCAATCAAGAAGATTATCAACATAATGGGAATAATAACAATAATCCCAATTGTACCAATAATACCCATCACCAATGCAAGATTTGTAACAAGAGTTTCAATACAGGGCAGGCTTTGGGAGGTCATAAGAGGTGCCACTGGACTGGCCCGGTCGAGCCCCCCTCGAGCCAAGAAGCGAGCCAGCCGAGCCGGAGGGTTCTGGAGTTTGATCTAAATGAGGTGCCCACCATGGAGGATGATGATCATGCAGCTGGTTGTGCTTATGATTATGATGCATTGTCCTCATACAACTCAAATATTGCGTAA

Network for GWHGAAZE003013

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	3	24	1.60E-08
PF13912.7	zf-C2H2_6	51	74	1.10E-07
PF13912.7	zf-C2H2_6	277	300	7.90E-09
PF13912.7	zf-C2H2_6	341	365	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.162
	SRR3591706	second leaf	0.530
	SRR3591707	mature leaf	0.287
	SRR3591708	Shoot apex	0.152
	SRR3591709	Stem	0.522
	SRR3591710	White floral bud	0.150
	SRR3591711	White flower	0.258
	SRR3591712	Green floral bud	0.632
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.294
	SRR8316896	Juvenile bud stage	0.249
	SRR8316897	Juvenile bud stage	0.375
	SRR8316894	Third green stage	0.174
	SRR8316900	Third green stage	0.329
	SRR8316901	Third green stage	0.251
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.128
	SRR8316903	Complete white stage	0.152
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.146
	SRR6706287	Light intensity 50%	0.099
	SRR6706288	Light intensity 20%	0.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.576
	CNS0095593	Slightly white alabastrum(diploid) 2	0.177
	CNS0095594	Slightly white alabastrum(diploid) 3	0.233
	CNS0095595	Whole white alabastrum(diploid) 2	0.182
	CNS0095596	Whole white alabastrum(diploid) 3	0.262
	CNS0095597	Whole white alabastrum(diploid) 4	0.197
	CNS0095598	Silvery flower (diploied) 1	0.075
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.075
	CNS0095601	Golden flower (diploid) 1	0.229
	CNS0095602	Golden flower (diploid) 2	0.102
	CNS0095603	Golden flower (diploid) 3	0.120
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.276
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.884
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.329
	CNS0095610	Silvery flower (tetraploid) 1	0.065
	CNS0095611	Silvery flower (tetraploid) 2	0.057
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.065
	CNS0095614	Golden flower (tetraploid) 2	0.050
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.438
	CRR073298	Stem 2	0.156
	CRR073299	Stem 3	0.904
	CRR073300	Leaf 1	0.102
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.030
	CRR073303	Juvenile bud 1	0.092
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.068
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.006
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.407
	CRR073316	Gold flowering 2	0.061
	CRR073317	Gold flowering 3	0.349
	CRR073318	Tawny withering 1	0.203
	CRR073319	Tawny withering 2	0.399
	CRR073320	Tawny withering 3	0.089