Gene detail

Detail information of GWHGAAZE003021

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AEQ29020.1	7.6852E-117	WRKY7 [Panax quinquefolius]
Swissprot	tr\|Q9FG77\|WRKY2_ARATH	2E-48	Probable WRKY transcription factor 2
trEMBL	tr\|K4ENK0\|K4ENK0_PANQU	3E-117	WRKY7 {ECO:0000313\|EMBL:AEQ29020.1}
TAIR10	AT5G56270.1	1E-36	WRKY DNA-binding protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90198355	90202360	-
GWHAAZE00000001	mRNA	90198355	90202360	-
GWHAAZE00000001	exon	90201926	90202360	-
GWHAAZE00000001	exon	90201056	90201238	-
GWHAAZE00000001	exon	90200426	90200710	-
GWHAAZE00000001	exon	90199872	90200101	-
GWHAAZE00000001	exon	90198355	90198916	-
GWHAAZE00000001	CDS	90201926	90202360	-
GWHAAZE00000001	CDS	90201056	90201238	-
GWHAAZE00000001	CDS	90200426	90200710	-
GWHAAZE00000001	CDS	90199872	90200101	-
GWHAAZE00000001	CDS	90198355	90198916	-

Transcript Sequence
>GWHTAAZE003025 ATGGGTGGATTTGATGACCATGTTGCTATAATGGGAGACTGGATGCCTCCCAGTCCTAGCCCTAGGGCCTTTTTCTCAGCAATGTTGGGTGAAGATATAGGTTTAAGGTCATTTTCCGATCATATGGTTGAAAATGAAAACAAAGAGCAAATACTTTCAGGAAATGCCAACAAAAAGGACAATACGGCACTTGAGGGTGCAAGTGGTGATCAAGAAACTAAATCAGCTGAGCAGAAAACGAGCTCGTGTGGGGGTCTTTTGGAAAGAATGGCTGCTAGAGCTGGGTTTAATGTTCCGAGGTTAAATACAAAGAATATTAGACCTGCTGCTGATCTTTCGCAGAACCCAGAAATTCGGTCTCCTTACTTGACAATTCCTCCTGGCCTCAGTCCAACAACCCTGCTAGATTCTCCAGTTTTCCTCTCTAATTCACTGGTTCAGCCATCTCCAACAACAGGAAAATTCCAGTTTTTCCCAAATGGCAATTGTAGAAGCAGCTCTATGTTTATCACAGAGGGTCTTGACAAGGATAAAGATAATTTCTTTGACAATATCAATAATTCCGCCTTTGCTTTCAAGCCTGTTGCTGAATCCAGTCCCTCCCTTTTTCTTGGTCCATTGCCTCCATCCACTCTTCCTCAGCAATTTTTTCCCAACATCGAGGTTTCAGTTCAGTCGGAGAATCTTCTGTGTCAAAGAATAGAACCCGGAAAACTTCACTCTGAAAATGAAGCGTCACTACATCTTCAACCTGACTTCTCCAGATCATCTGTTGAAAAGGATAGTAATAATATCTCAACAGAAACTAGGGCTTTTAATACTGTTACAGATAGTGCAGAACATTCTCCACCTCCTGTTGAACAGCAACTCGAAGATTCCAATCAAAGAATCAGCAGAGATACGGATTGGAGACGTGATAATCTCGAGGTGACATCATCTGCATCGTTGGTCGATGAATACTCTAATGCGCCTACAGATTTGCCAGCTCAGAATGGGAGTCAACTTGAATTGGGTGATGCAGTGGATCGTTCTTCAACCTTTTCAAACGATGAAGATGAAGATGAATGCGCAACACGTGGCAGCGAATCATTGGGATGCGATGGAGAAGGGGAAGAATCTGAGTCGAAGAGAAGGAGTTACTACAAGTGCACAAATGCAGGATGCACGGTGAGGAAGCACGTGGAAAGGGCTTCCCATGACCTCAAATCAGTAATCACCACTTATGAGGGTAAGCACAATCATGATGTTCCTGCAGCTCGCAACAGCAGTCACACCAACTCCAACGGACCCTCACAAGCTGCACCTCAAGCTCAATCTCACAGACCTGAGCCATCTCAAGTTCAGAACAACAGCATGGCTAGGTTCGAAAGGCCTCCTCATTCACTCAGTTCGTTTGGTCTACCTGTTAGGCAACAGTTAGGCGGTCCCAACAGTTTCGGTTTTGGGATGAACCAACCGGGACTAGCCAACTTGGCAATGGCTGGGTTGGGGCCCAACCAAGGGAAGCTACCGGGTCTGCCAGTTCATCCTTATTTTGGGCAGGCAAGGTCGATCAGTGAAATGGGTTTTATGCTGCCAAAAGGGGAACCAAAGGTGGAGCCTATGTCGGAACCTGGTGGTATGAACTACCTCGGCAATGGCTTGTCTGTTTATCATCAGATCATGAGTAGGTTACCCCTTGGACCTCAGATGTAA

Network for GWHGAAZE003021

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	375	415	1.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
K18835	WRKY2	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.455
	SRR3591706	second leaf	2.867
	SRR3591707	mature leaf	2.043
	SRR3591708	Shoot apex	8.606
	SRR3591709	Stem	8.176
	SRR3591710	White floral bud	13.975
	SRR3591711	White flower	5.910
	SRR3591712	Green floral bud	16.608
	SRR3591713	Yellow flower	1.810
SRP173429	SRR8316895	Juvenile bud stage	9.598
	SRR8316896	Juvenile bud stage	15.630
	SRR8316897	Juvenile bud stage	7.495
	SRR8316894	Third green stage	6.655
	SRR8316900	Third green stage	15.179
	SRR8316901	Third green stage	17.235
	SRR8316898	Complete white stage	5.157
	SRR8316899	Complete white stage	10.357
	SRR8316903	Complete white stage	6.785
	SRR8316902	Silver flowering stage	3.607
	SRR8316904	Silver flowering stage	4.322
	SRR8316905	Silver flowering stage	2.674
	SRR8316906	Gold flowering stage	6.345
	SRR8316907	Gold flowering stage	7.439
	SRR8316908	Gold flowering stage	6.734
SRP132670	SRR6706286	Control	12.178
	SRR6706287	Light intensity 50%	12.470
	SRR6706288	Light intensity 20%	12.450
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.102
	CNS0095593	Slightly white alabastrum(diploid) 2	10.787
	CNS0095594	Slightly white alabastrum(diploid) 3	14.790
	CNS0095595	Whole white alabastrum(diploid) 2	17.158
	CNS0095596	Whole white alabastrum(diploid) 3	16.959
	CNS0095597	Whole white alabastrum(diploid) 4	22.851
	CNS0095598	Silvery flower (diploied) 1	7.483
	CNS0095599	Silvery flower (diploied) 2	4.812
	CNS0095600	Silvery flower (diploied) 3	8.163
	CNS0095601	Golden flower (diploid) 1	3.830
	CNS0095602	Golden flower (diploid) 2	5.889
	CNS0095603	Golden flower (diploid) 3	6.393
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.312
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.837
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.064
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.615
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.537
	CNS0095610	Silvery flower (tetraploid) 1	3.705
	CNS0095611	Silvery flower (tetraploid) 2	5.407
	CNS0095612	Silvery flower (tetraploid) 3	5.048
	CNS0095613	Golden flower (tetraploid) 1	1.248
	CNS0095614	Golden flower (tetraploid) 2	1.813
	CNS0095615	Golden flower (tetraploid) 3	2.706
CRA001975	CRR073297	Stem 1	17.542
	CRR073298	Stem 2	17.720
	CRR073299	Stem 3	13.790
	CRR073300	Leaf 1	19.657
	CRR073301	Leaf 2	19.070
	CRR073302	Leaf 3	12.545
	CRR073303	Juvenile bud 1	14.735
	CRR073304	Juvenile bud 2	12.233
	CRR073305	Juvenile bud 3	17.638
	CRR073306	Third green 1	15.618
	CRR073307	Third green 2	15.122
	CRR073308	Third green 3	13.890
	CRR073309	Second white 1	11.673
	CRR073310	Second white 2	11.076
	CRR073311	Second white 3	8.582
	CRR073312	Silver flowering 1	7.092
	CRR073313	Silver flowering 2	9.386
	CRR073314	Silver flowering 3	4.684
	CRR073315	Gold flowering 1	8.631
	CRR073316	Gold flowering 2	12.430
	CRR073317	Gold flowering 3	8.934
	CRR073318	Tawny withering 1	12.240
	CRR073319	Tawny withering 2	9.165
	CRR073320	Tawny withering 3	11.216