Gene detail

Detail information of GWHGAAZE003028

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008226283.1	0	PREDICTED: putative serine/threonine-protein kinase [Prunus mume]
COG	YP_007779934.1	2E-26	Serine/threonine protein kinase
Swissprot	tr\|C0LGH3\|Y5614_ARATH	2E-110	Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor)
trEMBL	tr\|A0A067L4K9\|A0A067L4K9_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP43401.1}
TAIR10	AT1G16670.1	2E-138	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90363856	90365947	-
GWHAAZE00000001	mRNA	90363856	90365947	-
GWHAAZE00000001	exon	90363856	90364383	-
GWHAAZE00000001	exon	90364597	90364747	-
GWHAAZE00000001	exon	90364885	90365122	-
GWHAAZE00000001	exon	90365309	90365519	-
GWHAAZE00000001	exon	90365852	90365947	-
GWHAAZE00000001	CDS	90365852	90365947	-
GWHAAZE00000001	CDS	90365309	90365519	-
GWHAAZE00000001	CDS	90364885	90365122	-
GWHAAZE00000001	CDS	90364597	90364747	-
GWHAAZE00000001	CDS	90363952	90364383	-
GWHAAZE00000001	three_prime_UTR	90363856	90363951	-

Transcript Sequence
>GWHTAAZE003032 ATGAATCTTTTCTCCTACAAGGATCTAAAAGTCGCCACTGGAGATTTTAGTCCAGCCAATAAAATTGGAGAGGGAGGATTTGGCTCCGTATATAAGGGGAAGCTGAAATGTGGGAAAAGAGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGAGTACAAGAGTTCTTGACAGAGATTAAAGTGATTTCTGCTATAGAGCATGAAAATTTAGTGAAGCTTATTGGCTGTTGTGCTGAGGAAAATCATAGAATTTTGGTCTACAACTACCATGAGAATAACAACCTTGCACAAAGCCTTCTTGGCAGATATCACAGTAGCATCCAATTTAGTTGGCAAACGCGAAGTAGAATTTGCATTGGGATTGCAAAGGGGTTGGCCTTTCTTCATGAGGAAGTGCGACCGCATATTATTCACCGGGATATTAAAGCAAGCAATATTCTCCTTGACAAAAAATTGACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATCCCTCCCAATACAACCCATGTTAGTACCAGGGTTGCAGGAACAATAGGGTATTTGGCACCAGAGTATGCAATAAGAGGGCGGTTGACACGTAAAGCAGATGTTTACAGTTTTGGTGTTCTTCTAGTGGAAATAGTCAGTGGGAGATGCAACACAAACACGCTATTACCGGTTGAAGAACAATATCTCCTTGAAACGACGTGGCAACTATACGAGCAAAGGGAGTTGGCGGAGCTCGTGGACCCATCGTTAAATGGGGATTTTGATGCCGAAGAGGCTTGCAAGTTCTTGAAGATTGGTCTCCTTTGTACCCAGGACACCTCAAAGCTTCGGCCCTCAATGTCAACCGTGGTGAAGATGCTAATCGGTGAGATTAATGTTGATAATGAGGCAATTATGATAACAAAACCGGGGCTAATCACCGATTTCATGGAACTCAAGATTAGGAGCAACCCTAATCCTAAGCCCGATGGTAACCCTTCCCATTACAATAATGTATCCTCTGCATCTGGCATGGAAACACCCACAAATTCAACCTTTTCGTTTGGAACTTCATCTCAAGCAACCAACACGTTTACAGCAATATGCGACCATCATATTTTAACTCCACCAAGAGAGGTAGCTAGTTAGAATATTTTTTCTTTTTGGGTTTATGGATCTTGTTAGCTTTGTATAAATTGTATTATTCGCTCTTTTTTCTCATGTCAAAACACTTGGCACGCTTGA

Network for GWHGAAZE003028

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	20	286	1.10E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.773
	SRR3591706	second leaf	0.970
	SRR3591707	mature leaf	6.373
	SRR3591708	Shoot apex	2.492
	SRR3591709	Stem	5.947
	SRR3591710	White floral bud	4.788
	SRR3591711	White flower	7.744
	SRR3591712	Green floral bud	3.836
	SRR3591713	Yellow flower	14.902
SRP173429	SRR8316895	Juvenile bud stage	4.965
	SRR8316896	Juvenile bud stage	5.220
	SRR8316897	Juvenile bud stage	3.264
	SRR8316894	Third green stage	2.232
	SRR8316900	Third green stage	5.321
	SRR8316901	Third green stage	5.215
	SRR8316898	Complete white stage	2.613
	SRR8316899	Complete white stage	8.159
	SRR8316903	Complete white stage	3.233
	SRR8316902	Silver flowering stage	6.255
	SRR8316904	Silver flowering stage	7.298
	SRR8316905	Silver flowering stage	2.190
	SRR8316906	Gold flowering stage	15.231
	SRR8316907	Gold flowering stage	13.195
	SRR8316908	Gold flowering stage	19.690
SRP132670	SRR6706286	Control	4.647
	SRR6706287	Light intensity 50%	5.362
	SRR6706288	Light intensity 20%	5.208
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.616
	CNS0095593	Slightly white alabastrum(diploid) 2	5.846
	CNS0095594	Slightly white alabastrum(diploid) 3	8.607
	CNS0095595	Whole white alabastrum(diploid) 2	4.780
	CNS0095596	Whole white alabastrum(diploid) 3	4.772
	CNS0095597	Whole white alabastrum(diploid) 4	3.604
	CNS0095598	Silvery flower (diploied) 1	4.823
	CNS0095599	Silvery flower (diploied) 2	3.657
	CNS0095600	Silvery flower (diploied) 3	7.768
	CNS0095601	Golden flower (diploid) 1	4.922
	CNS0095602	Golden flower (diploid) 2	9.993
	CNS0095603	Golden flower (diploid) 3	8.953
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.058
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.984
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.671
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.724
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.463
	CNS0095610	Silvery flower (tetraploid) 1	9.438
	CNS0095611	Silvery flower (tetraploid) 2	6.371
	CNS0095612	Silvery flower (tetraploid) 3	10.088
	CNS0095613	Golden flower (tetraploid) 1	8.610
	CNS0095614	Golden flower (tetraploid) 2	10.705
	CNS0095615	Golden flower (tetraploid) 3	4.644
CRA001975	CRR073297	Stem 1	8.459
	CRR073298	Stem 2	4.606
	CRR073299	Stem 3	4.592
	CRR073300	Leaf 1	4.239
	CRR073301	Leaf 2	2.369
	CRR073302	Leaf 3	2.106
	CRR073303	Juvenile bud 1	2.890
	CRR073304	Juvenile bud 2	1.564
	CRR073305	Juvenile bud 3	3.471
	CRR073306	Third green 1	6.692
	CRR073307	Third green 2	4.798
	CRR073308	Third green 3	4.200
	CRR073309	Second white 1	7.310
	CRR073310	Second white 2	5.451
	CRR073311	Second white 3	3.442
	CRR073312	Silver flowering 1	5.510
	CRR073313	Silver flowering 2	6.339
	CRR073314	Silver flowering 3	4.319
	CRR073315	Gold flowering 1	4.527
	CRR073316	Gold flowering 2	4.144
	CRR073317	Gold flowering 3	1.917
	CRR073318	Tawny withering 1	3.998
	CRR073319	Tawny withering 2	9.559
	CRR073320	Tawny withering 3	6.547