Detail information of GWHGAAZE003037


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007225744.10hypothetical protein PRUPE_ppa007124mg [Prunus persica]
COGYP_423783.16E-106porphobilinogen deaminase
Swissprottr|Q43082|HEM3_PEA0Porphobilinogen deaminase, chloroplastic (Precursor)
trEMBLtr|M5XYM7|M5XYM7_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ26943.1}
TAIR10AT5G08280.12E-160hydroxymethylbilane synthase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9055343190556771-
GWHAAZE00000001mRNA9055343190556771-
GWHAAZE00000001exon9055343190553543-
GWHAAZE00000001exon9055366590553842-
GWHAAZE00000001exon9055401590554221-
GWHAAZE00000001exon9055433990554744-
GWHAAZE00000001exon9055655790556771-
GWHAAZE00000001CDS9055655790556771-
GWHAAZE00000001CDS9055433990554744-
GWHAAZE00000001CDS9055401590554221-
GWHAAZE00000001CDS9055366590553842-
GWHAAZE00000001CDS9055343190553543-
Transcript Sequence

Network for GWHGAAZE003037

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01379.21Porphobil_deam652777.90E-78
PF03900.16Porphobil_deamC2903626.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01749hemC, HMBS Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0033014biological_processtetrapyrrole biosynthetic process
GO:0018160biological_processpeptidyl-pyrromethane cofactor linkage
GO:0004418molecular_functionhydroxymethylbilane synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf125.923
SRR3591706second leaf207.701
SRR3591707mature leaf62.760
SRR3591708Shoot apex201.856
SRR3591709Stem36.821
SRR3591710White floral bud53.981
SRR3591711White flower74.799
SRR3591712Green floral bud38.408
SRR3591713Yellow flower158.324
SRP173429 SRR8316895Juvenile bud stage 53.416
SRR8316896Juvenile bud stage 49.960
SRR8316897Juvenile bud stage 32.702
SRR8316894Third green stage 21.132
SRR8316900Third green stage 58.980
SRR8316901Third green stage 40.906
SRR8316898Complete white stage 29.112
SRR8316899Complete white stage 40.575
SRR8316903Complete white stage 45.286
SRR8316902Silver flowering stage39.349
SRR8316904Silver flowering stage51.592
SRR8316905Silver flowering stage27.447
SRR8316906Gold flowering stage 86.385
SRR8316907Gold flowering stage 81.492
SRR8316908Gold flowering stage 74.478
SRP132670SRR6706286Control63.316
SRR6706287Light intensity 50%54.362
SRR6706288Light intensity 20%56.371
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.042
CNS0095593Slightly white alabastrum(diploid) 231.635
CNS0095594Slightly white alabastrum(diploid) 327.179
CNS0095595Whole white alabastrum(diploid) 226.021
CNS0095596Whole white alabastrum(diploid) 326.233
CNS0095597Whole white alabastrum(diploid) 418.997
CNS0095598Silvery flower (diploied) 159.306
CNS0095599Silvery flower (diploied) 249.876
CNS0095600Silvery flower (diploied) 384.393
CNS0095601Golden flower (diploid) 167.337
CNS0095602Golden flower (diploid) 2115.592
CNS0095603Golden flower (diploid) 3112.204
CNS0095604Slightly white alabastrum(tetraploid) 140.057
CNS0095605Slightly white alabastrum(tetraploid) 240.749
CNS0095606Slightly white alabastrum(tetraploid) 366.794
CNS0095607Whole white alabastrum(tetraploid) 113.618
CNS0095608Whole white alabastrum(tetraploid) 211.928
CNS0095609Whole white alabastrum(tetraploid) 349.591
CNS0095610Silvery flower (tetraploid) 195.858
CNS0095611Silvery flower (tetraploid) 2107.943
CNS0095612Silvery flower (tetraploid) 396.113
CNS0095613Golden flower (tetraploid) 1113.997
CNS0095614Golden flower (tetraploid) 2121.752
CNS0095615Golden flower (tetraploid) 3231.301
CRA001975CRR073297Stem 1119.358
CRR073298Stem 2108.624
CRR073299Stem 3137.214
CRR073300Leaf 161.409
CRR073301Leaf 266.126
CRR073302Leaf 378.081
CRR073303Juvenile bud 166.186
CRR073304Juvenile bud 256.242
CRR073305Juvenile bud 360.096
CRR073306Third green 152.944
CRR073307Third green 243.469
CRR073308Third green 348.847
CRR073309Second white 146.998
CRR073310Second white 244.826
CRR073311Second white 349.195
CRR073312Silver flowering 167.973
CRR073313Silver flowering 271.219
CRR073314Silver flowering 371.066
CRR073315Gold flowering 1107.128
CRR073316Gold flowering 2118.875
CRR073317Gold flowering 3102.747
CRR073318Tawny withering 141.426
CRR073319Tawny withering 242.398
CRR073320Tawny withering 351.053