Detail information of GWHGAAZE003040


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004488812.10PREDICTED: elongation factor 2-like [Cicer arietinum]
COGYP_008432247.11E-160elongation factor EF-2
Swissprottr|O23755|EF2_BETVU0Elongation factor 2
trEMBLtr|G7IH13|G7IH13_MEDTR0Translation elongation factor EF-2 subunit {ECO:0000313|EMBL:AES66417.1}
TAIR10AT1G56070.10Ribosomal protein S5/Elongation factor G/III/V family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9061313990616652-
GWHAAZE00000001mRNA9061313990616652-
GWHAAZE00000001exon9061313990615579-
GWHAAZE00000001exon9061645190616538-
GWHAAZE00000001exon9061665090616652-
GWHAAZE00000001CDS9061665090616652-
GWHAAZE00000001CDS9061645190616538-
GWHAAZE00000001CDS9061313990615579-
Transcript Sequence

Network for GWHGAAZE003040

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00009.28GTP_EFTU173424.00E-66
PF03144.26GTP_EFTU_D23944679.60E-09
PF14492.7EFG_III4875496.60E-12
PF03764.19EFG_IV6117211.60E-29
PF00679.25EFG_C7248114.70E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03234EEF2 AMPK signaling pathway map04152
Oxytocin signaling pathwaymap04921

Gene Ontology

GO term OntologyName
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf533.017
SRR3591706second leaf312.757
SRR3591707mature leaf196.034
SRR3591708Shoot apex474.784
SRR3591709Stem286.971
SRR3591710White floral bud362.195
SRR3591711White flower416.895
SRR3591712Green floral bud574.389
SRR3591713Yellow flower273.036
SRP173429 SRR8316895Juvenile bud stage 286.297
SRR8316896Juvenile bud stage 397.798
SRR8316897Juvenile bud stage 191.464
SRR8316894Third green stage 185.144
SRR8316900Third green stage 620.309
SRR8316901Third green stage 576.532
SRR8316898Complete white stage 145.617
SRR8316899Complete white stage 637.004
SRR8316903Complete white stage 260.475
SRR8316902Silver flowering stage130.256
SRR8316904Silver flowering stage170.857
SRR8316905Silver flowering stage82.807
SRR8316906Gold flowering stage 249.692
SRR8316907Gold flowering stage 236.074
SRR8316908Gold flowering stage 323.458
SRP132670SRR6706286Control515.064
SRR6706287Light intensity 50%548.066
SRR6706288Light intensity 20%601.994
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1309.351
CNS0095593Slightly white alabastrum(diploid) 2353.544
CNS0095594Slightly white alabastrum(diploid) 3267.608
CNS0095595Whole white alabastrum(diploid) 2294.289
CNS0095596Whole white alabastrum(diploid) 3309.188
CNS0095597Whole white alabastrum(diploid) 4230.747
CNS0095598Silvery flower (diploied) 1258.586
CNS0095599Silvery flower (diploied) 2257.979
CNS0095600Silvery flower (diploied) 3420.499
CNS0095601Golden flower (diploid) 1199.596
CNS0095602Golden flower (diploid) 2390.530
CNS0095603Golden flower (diploid) 3367.378
CNS0095604Slightly white alabastrum(tetraploid) 1317.137
CNS0095605Slightly white alabastrum(tetraploid) 2244.816
CNS0095606Slightly white alabastrum(tetraploid) 3611.332
CNS0095607Whole white alabastrum(tetraploid) 1141.850
CNS0095608Whole white alabastrum(tetraploid) 2122.171
CNS0095609Whole white alabastrum(tetraploid) 3495.259
CNS0095610Silvery flower (tetraploid) 1334.253
CNS0095611Silvery flower (tetraploid) 2354.790
CNS0095612Silvery flower (tetraploid) 3184.110
CNS0095613Golden flower (tetraploid) 1133.960
CNS0095614Golden flower (tetraploid) 2289.023
CNS0095615Golden flower (tetraploid) 3239.630
CRA001975CRR073297Stem 1736.961
CRR073298Stem 2728.927
CRR073299Stem 3840.248
CRR073300Leaf 1939.862
CRR073301Leaf 2924.274
CRR073302Leaf 3916.960
CRR073303Juvenile bud 11013.477
CRR073304Juvenile bud 2806.880
CRR073305Juvenile bud 31221.498
CRR073306Third green 1180.459
CRR073307Third green 2145.623
CRR073308Third green 3198.272
CRR073309Second white 1260.779
CRR073310Second white 2182.958
CRR073311Second white 3167.001
CRR073312Silver flowering 1200.767
CRR073313Silver flowering 2285.674
CRR073314Silver flowering 3212.688
CRR073315Gold flowering 1346.111
CRR073316Gold flowering 2472.598
CRR073317Gold flowering 3537.297
CRR073318Tawny withering 1536.929
CRR073319Tawny withering 2400.654
CRR073320Tawny withering 3508.131