Gene detail

Detail information of GWHGAAZE003042

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009591286.1	1.3252E-124	PREDICTED: transcription factor JUNGBRUNNEN 1-like [Nicotiana tomentosiformis]
Swissprot	tr\|Q9SK55\|NAC42_ARATH	2E-79	Transcription factor JUNGBRUNNEN 1
trEMBL	tr\|A0A068UZ64\|A0A068UZ64_COFCA	2E-120	Coffea canephora DH200=94 genomic scaffold, scaffold_76 {ECO:0000313\|EMBL:CDP13592.1}
TAIR10	AT2G43000.1	1E-64	NAC domain containing protein 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	90671933	90676160	-
GWHAAZE00000001	mRNA	90671933	90676160	-
GWHAAZE00000001	exon	90675911	90676160	-
GWHAAZE00000001	exon	90674143	90674493	-
GWHAAZE00000001	exon	90671933	90672390	-
GWHAAZE00000001	CDS	90675911	90676160	-
GWHAAZE00000001	CDS	90674143	90674493	-
GWHAAZE00000001	CDS	90671933	90672390	-

Transcript Sequence
>GWHTAAZE003046 ATGGTAGAGATGGAAGTAGAGAATATTAAGAAGAGTAGTAGCAGCACTGCCATATGTAATACTACTACTTACAATAATAATGAATTAATAGGTGATGAAGATGATGTTCCACTTCCAGGGTTTAGGTTTCATCCCACAGATGAAGAACTTGTTGGTTTTTATCTTCGGAGGAAGGTCGATAAGAGACCCATCGCTATCGAGCTCATCAAACAGATTGATATCTACAAATTCGATCCCTGGGATCTTCCAAAAGGTAGTAATGTGGGAGACAAGGAATGGTACTTCTATTGCAAAAGAGGGAGAAAGTATAGGAATAGCATAAGACCTAACAGAGTTACCGGCTCTGGGTTTTGGAAGGCAACTGGCATTGATCGACCCATTTACTCCTCTTCTTCTTCTGCTGCTGCTGGAGATGCAGCCCGTCATTGCATTGGCCTCAAGAAATCACTTGTTTATTATCGTGGTAGTGCTGGAAAAGGGACCAAAACTGACTGGATGATGCATGAGTTCCGCCTTCCCCCCGATGACAAAACCACCAAACTCATTGATAGTCAAACGACTACTCAAGAAGCTGTAAGAAACTTTTTCCATTTGAACCCCGAAATTGTGATTGTGCAGGAAGTTTGGACACTGTGTAGAATTCTGAAGAGAAACGTGTCGTATAAAAAGTGCGTACCAGATTGGAGAGAAGTATGCAATAATGGCGGTTCTAAGAGAATTGGTAATCCAGTTGAAGCGAGCTCCAAAGCATGCAGCACTGCAGAGTCTAACGATTGCCAAAGTTACATTAGTTTTACAGATCCGGGAATTCGACAGACAAACGAACGGAAGCCCTTTCCTTGTTCTCGTATGAATGAAATGAATCATTTGCCTGGAAGTAGCCAATTGAGCTCAACATCAGTAGTATCTGAACAACCTCCTACGTCTGCATCCTACGCCAACTATTTTATGACAGGCATGAACGAGATGTTATTAAAGCACGGAGATTGGGACGAACTTGGGTCAGTTGTGGGCTTTGCTGCTGATCCCTTTATTATGTTTACTAATAATAGTAGTTAA

Network for GWHGAAZE003042

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	39	172	1.10E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.101
	SRR3591706	second leaf	0.106
	SRR3591707	mature leaf	1.033
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.793
	SRR3591710	White floral bud	1.736
	SRR3591711	White flower	1.670
	SRR3591712	Green floral bud	1.133
	SRR3591713	Yellow flower	2.951
SRP173429	SRR8316895	Juvenile bud stage	0.885
	SRR8316896	Juvenile bud stage	4.154
	SRR8316897	Juvenile bud stage	1.482
	SRR8316894	Third green stage	1.210
	SRR8316900	Third green stage	0.807
	SRR8316901	Third green stage	0.798
	SRR8316898	Complete white stage	0.447
	SRR8316899	Complete white stage	2.638
	SRR8316903	Complete white stage	0.733
	SRR8316902	Silver flowering stage	3.750
	SRR8316904	Silver flowering stage	2.998
	SRR8316905	Silver flowering stage	1.673
	SRR8316906	Gold flowering stage	8.290
	SRR8316907	Gold flowering stage	2.837
	SRR8316908	Gold flowering stage	10.243
SRP132670	SRR6706286	Control	1.351
	SRR6706287	Light intensity 50%	2.119
	SRR6706288	Light intensity 20%	0.969
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.483
	CNS0095593	Slightly white alabastrum(diploid) 2	1.016
	CNS0095594	Slightly white alabastrum(diploid) 3	1.350
	CNS0095595	Whole white alabastrum(diploid) 2	0.823
	CNS0095596	Whole white alabastrum(diploid) 3	0.223
	CNS0095597	Whole white alabastrum(diploid) 4	1.151
	CNS0095598	Silvery flower (diploied) 1	2.559
	CNS0095599	Silvery flower (diploied) 2	2.273
	CNS0095600	Silvery flower (diploied) 3	2.396
	CNS0095601	Golden flower (diploid) 1	8.563
	CNS0095602	Golden flower (diploid) 2	4.261
	CNS0095603	Golden flower (diploid) 3	3.189
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.414
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.145
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.061
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.120
	CNS0095610	Silvery flower (tetraploid) 1	1.035
	CNS0095611	Silvery flower (tetraploid) 2	0.073
	CNS0095612	Silvery flower (tetraploid) 3	0.236
	CNS0095613	Golden flower (tetraploid) 1	1.629
	CNS0095614	Golden flower (tetraploid) 2	2.356
	CNS0095615	Golden flower (tetraploid) 3	0.574
CRA001975	CRR073297	Stem 1	0.160
	CRR073298	Stem 2	0.782
	CRR073299	Stem 3	0.233
	CRR073300	Leaf 1	0.121
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.225
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.401
	CRR073306	Third green 1	0.070
	CRR073307	Third green 2	0.139
	CRR073308	Third green 3	0.085
	CRR073309	Second white 1	0.178
	CRR073310	Second white 2	0.589
	CRR073311	Second white 3	0.163
	CRR073312	Silver flowering 1	1.920
	CRR073313	Silver flowering 2	1.587
	CRR073314	Silver flowering 3	1.112
	CRR073315	Gold flowering 1	0.387
	CRR073316	Gold flowering 2	0.825
	CRR073317	Gold flowering 3	2.013
	CRR073318	Tawny withering 1	9.122
	CRR073319	Tawny withering 2	11.006
	CRR073320	Tawny withering 3	0.508