Detail information of GWHGAAZE003043


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004250781.12.445E-100PREDICTED: LOB domain-containing protein 4-like [Solanum lycopersicum]
Swissprottr|Q9SHE9|LBD4_ARATH7E-76LOB domain-containing protein 4
trEMBLtr|K4D8L7|K4D8L7_SOLLC9E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc11g045530.1.1}
TAIR10AT1G31320.13E-55LOB domain-containing protein 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9070206390706420+
GWHAAZE00000001mRNA9070206390706420+
GWHAAZE00000001exon9070206390702245+
GWHAAZE00000001exon9070608290706420+
GWHAAZE00000001CDS9070206390702245+
GWHAAZE00000001CDS9070608290706420+
Transcript Sequence

Network for GWHGAAZE003043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB151123.00E-43
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.081
SRR3591706second leaf1.002
SRR3591707mature leaf0.495
SRR3591708Shoot apex4.998
SRR3591709Stem12.380
SRR3591710White floral bud0.000
SRR3591711White flower0.446
SRR3591712Green floral bud0.436
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.311
SRR8316896Juvenile bud stage 0.387
SRR8316897Juvenile bud stage 0.317
SRR8316894Third green stage 0.326
SRR8316900Third green stage 1.328
SRR8316901Third green stage 0.748
SRR8316898Complete white stage 1.287
SRR8316899Complete white stage 4.753
SRR8316903Complete white stage 0.903
SRR8316902Silver flowering stage0.562
SRR8316904Silver flowering stage0.605
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control1.089
SRR6706287Light intensity 50%1.506
SRR6706288Light intensity 20%1.919
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.117
CNS0095593Slightly white alabastrum(diploid) 21.652
CNS0095594Slightly white alabastrum(diploid) 30.646
CNS0095595Whole white alabastrum(diploid) 20.445
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.073
CNS0095598Silvery flower (diploied) 10.510
CNS0095599Silvery flower (diploied) 20.694
CNS0095600Silvery flower (diploied) 30.926
CNS0095601Golden flower (diploid) 10.989
CNS0095602Golden flower (diploid) 20.712
CNS0095603Golden flower (diploid) 30.439
CNS0095604Slightly white alabastrum(tetraploid) 10.677
CNS0095605Slightly white alabastrum(tetraploid) 20.873
CNS0095606Slightly white alabastrum(tetraploid) 33.214
CNS0095607Whole white alabastrum(tetraploid) 11.054
CNS0095608Whole white alabastrum(tetraploid) 20.058
CNS0095609Whole white alabastrum(tetraploid) 30.267
CNS0095610Silvery flower (tetraploid) 10.419
CNS0095611Silvery flower (tetraploid) 20.715
CNS0095612Silvery flower (tetraploid) 30.035
CNS0095613Golden flower (tetraploid) 10.000
CNS0095614Golden flower (tetraploid) 20.000
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.131
CRR073298Stem 21.211
CRR073299Stem 30.271
CRR073300Leaf 10.695
CRR073301Leaf 20.454
CRR073302Leaf 30.665
CRR073303Juvenile bud 10.902
CRR073304Juvenile bud 20.865
CRR073305Juvenile bud 30.599
CRR073306Third green 10.000
CRR073307Third green 20.049
CRR073308Third green 32.731
CRR073309Second white 10.456
CRR073310Second white 20.000
CRR073311Second white 30.149
CRR073312Silver flowering 10.264
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 18.726
CRR073316Gold flowering 24.369
CRR073317Gold flowering 35.582
CRR073318Tawny withering 130.934
CRR073319Tawny withering 210.297
CRR073320Tawny withering 322.001