Detail information of GWHGAAZE003053


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI20016.30unnamed protein product [Vitis vinifera]
COGYP_004775215.15E-40RHS repeat-associated core domain-containing protein
Swissprottr|C0LGH2|Y1561_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At1g56130 (Precursor)
trEMBLtr|F6H1S5|F6H1S5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB46144.1}
TAIR10AT1G56140.10Leucine-rich repeat transmembrane protein kinase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9097446290983261-
GWHAAZE00000001mRNA9097446290983261-
GWHAAZE00000001exon9098312090983261-
GWHAAZE00000001exon9098064890980840-
GWHAAZE00000001exon9098041890980489-
GWHAAZE00000001exon9098021890980289-
GWHAAZE00000001exon9098004390980114-
GWHAAZE00000001exon9097984690979917-
GWHAAZE00000001exon9097962790979698-
GWHAAZE00000001exon9097943790979508-
GWHAAZE00000001exon9097916790979238-
GWHAAZE00000001exon9097901290979083-
GWHAAZE00000001exon9097881390978884-
GWHAAZE00000001exon9097865190978719-
GWHAAZE00000001exon9097845190978516-
GWHAAZE00000001exon9097827090978335-
GWHAAZE00000001exon9097808490978128-
GWHAAZE00000001exon9097793090977994-
GWHAAZE00000001exon9097744590977821-
GWHAAZE00000001exon9097704790977245-
GWHAAZE00000001exon9097678190976951-
GWHAAZE00000001exon9097647990976597-
GWHAAZE00000001exon9097616790976385-
GWHAAZE00000001exon9097446290974824-
GWHAAZE00000001five_prime_UTR9098323890983261-
GWHAAZE00000001CDS9098312090983237-
GWHAAZE00000001CDS9098064890980840-
GWHAAZE00000001CDS9098041890980489-
GWHAAZE00000001CDS9098021890980289-
GWHAAZE00000001CDS9098004390980114-
GWHAAZE00000001CDS9097984690979917-
GWHAAZE00000001CDS9097962790979698-
GWHAAZE00000001CDS9097943790979508-
GWHAAZE00000001CDS9097916790979238-
GWHAAZE00000001CDS9097901290979083-
GWHAAZE00000001CDS9097881390978884-
GWHAAZE00000001CDS9097865190978719-
GWHAAZE00000001CDS9097845190978516-
GWHAAZE00000001CDS9097827090978335-
GWHAAZE00000001CDS9097808490978128-
GWHAAZE00000001CDS9097793090977994-
GWHAAZE00000001CDS9097744590977821-
GWHAAZE00000001CDS9097704790977245-
GWHAAZE00000001CDS9097678190976951-
GWHAAZE00000001CDS9097647990976597-
GWHAAZE00000001CDS9097616790976385-
GWHAAZE00000001CDS9097446290974824-
Transcript Sequence

Network for GWHGAAZE003053

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11721.9Malectin4266114.40E-43
PF07714.18PK_Tyr_Ser-Thr7007843.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_DLSV

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.437
SRR3591706second leaf4.477
SRR3591707mature leaf8.433
SRR3591708Shoot apex2.001
SRR3591709Stem2.531
SRR3591710White floral bud4.124
SRR3591711White flower4.140
SRR3591712Green floral bud2.902
SRR3591713Yellow flower4.039
SRP173429 SRR8316895Juvenile bud stage 2.417
SRR8316896Juvenile bud stage 3.617
SRR8316897Juvenile bud stage 1.429
SRR8316894Third green stage 1.675
SRR8316900Third green stage 0.999
SRR8316901Third green stage 1.729
SRR8316898Complete white stage 0.636
SRR8316899Complete white stage 2.566
SRR8316903Complete white stage 1.582
SRR8316902Silver flowering stage1.054
SRR8316904Silver flowering stage1.615
SRR8316905Silver flowering stage0.465
SRR8316906Gold flowering stage 9.888
SRR8316907Gold flowering stage 4.236
SRR8316908Gold flowering stage 10.664
SRP132670SRR6706286Control3.974
SRR6706287Light intensity 50%2.752
SRR6706288Light intensity 20%2.474
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.138
CNS0095593Slightly white alabastrum(diploid) 21.228
CNS0095594Slightly white alabastrum(diploid) 32.191
CNS0095595Whole white alabastrum(diploid) 21.419
CNS0095596Whole white alabastrum(diploid) 30.432
CNS0095597Whole white alabastrum(diploid) 40.940
CNS0095598Silvery flower (diploied) 17.541
CNS0095599Silvery flower (diploied) 23.794
CNS0095600Silvery flower (diploied) 32.831
CNS0095601Golden flower (diploid) 14.088
CNS0095602Golden flower (diploid) 25.097
CNS0095603Golden flower (diploid) 35.469
CNS0095604Slightly white alabastrum(tetraploid) 11.442
CNS0095605Slightly white alabastrum(tetraploid) 21.241
CNS0095606Slightly white alabastrum(tetraploid) 34.017
CNS0095607Whole white alabastrum(tetraploid) 11.602
CNS0095608Whole white alabastrum(tetraploid) 20.272
CNS0095609Whole white alabastrum(tetraploid) 31.331
CNS0095610Silvery flower (tetraploid) 11.818
CNS0095611Silvery flower (tetraploid) 22.425
CNS0095612Silvery flower (tetraploid) 31.607
CNS0095613Golden flower (tetraploid) 11.796
CNS0095614Golden flower (tetraploid) 22.943
CNS0095615Golden flower (tetraploid) 31.240
CRA001975CRR073297Stem 15.741
CRR073298Stem 22.871
CRR073299Stem 37.525
CRR073300Leaf 11.543
CRR073301Leaf 21.556
CRR073302Leaf 31.348
CRR073303Juvenile bud 10.284
CRR073304Juvenile bud 20.242
CRR073305Juvenile bud 30.874
CRR073306Third green 10.009
CRR073307Third green 20.000
CRR073308Third green 30.157
CRR073309Second white 10.122
CRR073310Second white 20.229
CRR073311Second white 30.400
CRR073312Silver flowering 13.195
CRR073313Silver flowering 21.753
CRR073314Silver flowering 31.599
CRR073315Gold flowering 18.756
CRR073316Gold flowering 27.902
CRR073317Gold flowering 37.426
CRR073318Tawny withering 16.024
CRR073319Tawny withering 28.348
CRR073320Tawny withering 33.470