Detail information of GWHGAAZE003073


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006340574.10PREDICTED: chorismate synthase 1, chloroplastic-like [Solanum tuberosum]
COGYP_007095382.15E-170chorismate synthase
Swissprottr|Q42885|AROC2_SOLLC0Chorismate synthase 2, chloroplastic (Precursor)
trEMBLtr|M1C9E1|M1C9E1_SOLTU0Chorismate synthase {ECO:0000256|RuleBase:RU000605}
TAIR10AT1G48850.13E-176chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9147532791482272-
GWHAAZE00000001mRNA9147532791482272-
GWHAAZE00000001exon9147532791475454-
GWHAAZE00000001exon9147583391475917-
GWHAAZE00000001exon9147672791476792-
GWHAAZE00000001exon9147687191476965-
GWHAAZE00000001exon9147715391477255-
GWHAAZE00000001exon9147745291477565-
GWHAAZE00000001exon9147890891478988-
GWHAAZE00000001exon9147941991479511-
GWHAAZE00000001exon9147961491479697-
GWHAAZE00000001exon9147982291479880-
GWHAAZE00000001exon9147997991480055-
GWHAAZE00000001exon9148032791480477-
GWHAAZE00000001exon9148212291482272-
GWHAAZE00000001CDS9148212291482272-
GWHAAZE00000001CDS9148032791480477-
GWHAAZE00000001CDS9147997991480055-
GWHAAZE00000001CDS9147982291479880-
GWHAAZE00000001CDS9147961491479697-
GWHAAZE00000001CDS9147941991479511-
GWHAAZE00000001CDS9147890891478988-
GWHAAZE00000001CDS9147745291477565-
GWHAAZE00000001CDS9147715391477255-
GWHAAZE00000001CDS9147687191476965-
GWHAAZE00000001CDS9147672791476792-
GWHAAZE00000001CDS9147583391475917-
GWHAAZE00000001CDS9147532791475454-
Transcript Sequence

Network for GWHGAAZE003073

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01264.22Chorismate_synt634047.70E-133
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01736aroC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0009073biological_processaromatic amino acid family biosynthetic process
GO:0004107molecular_functionchorismate synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf226.303
SRR3591706second leaf148.799
SRR3591707mature leaf95.233
SRR3591708Shoot apex148.182
SRR3591709Stem308.922
SRR3591710White floral bud248.496
SRR3591711White flower449.351
SRR3591712Green floral bud169.189
SRR3591713Yellow flower655.206
SRP173429 SRR8316895Juvenile bud stage 105.488
SRR8316896Juvenile bud stage 142.045
SRR8316897Juvenile bud stage 57.494
SRR8316894Third green stage 58.990
SRR8316900Third green stage 218.303
SRR8316901Third green stage 198.057
SRR8316898Complete white stage 113.519
SRR8316899Complete white stage 191.170
SRR8316903Complete white stage 176.462
SRR8316902Silver flowering stage398.900
SRR8316904Silver flowering stage501.974
SRR8316905Silver flowering stage330.716
SRR8316906Gold flowering stage 1258.941
SRR8316907Gold flowering stage 1166.355
SRR8316908Gold flowering stage 1320.759
SRP132670SRR6706286Control174.264
SRR6706287Light intensity 50%191.790
SRR6706288Light intensity 20%209.974
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1107.462
CNS0095593Slightly white alabastrum(diploid) 2109.041
CNS0095594Slightly white alabastrum(diploid) 391.518
CNS0095595Whole white alabastrum(diploid) 299.176
CNS0095596Whole white alabastrum(diploid) 3101.088
CNS0095597Whole white alabastrum(diploid) 496.212
CNS0095598Silvery flower (diploied) 1149.335
CNS0095599Silvery flower (diploied) 2159.967
CNS0095600Silvery flower (diploied) 3384.776
CNS0095601Golden flower (diploid) 1197.959
CNS0095602Golden flower (diploid) 2355.466
CNS0095603Golden flower (diploid) 3346.094
CNS0095604Slightly white alabastrum(tetraploid) 1137.901
CNS0095605Slightly white alabastrum(tetraploid) 2122.519
CNS0095606Slightly white alabastrum(tetraploid) 3260.194
CNS0095607Whole white alabastrum(tetraploid) 190.727
CNS0095608Whole white alabastrum(tetraploid) 289.224
CNS0095609Whole white alabastrum(tetraploid) 3225.492
CNS0095610Silvery flower (tetraploid) 1589.016
CNS0095611Silvery flower (tetraploid) 2489.244
CNS0095612Silvery flower (tetraploid) 3595.590
CNS0095613Golden flower (tetraploid) 1665.264
CNS0095614Golden flower (tetraploid) 2752.855
CNS0095615Golden flower (tetraploid) 3698.024
CRA001975CRR073297Stem 1221.521
CRR073298Stem 2200.964
CRR073299Stem 3214.411
CRR073300Leaf 1256.985
CRR073301Leaf 2231.498
CRR073302Leaf 3271.614
CRR073303Juvenile bud 1294.811
CRR073304Juvenile bud 2293.385
CRR073305Juvenile bud 3222.725
CRR073306Third green 1438.490
CRR073307Third green 2331.954
CRR073308Third green 3355.372
CRR073309Second white 1856.640
CRR073310Second white 2793.608
CRR073311Second white 3887.164
CRR073312Silver flowering 11194.963
CRR073313Silver flowering 21156.910
CRR073314Silver flowering 31219.011
CRR073315Gold flowering 1114.414
CRR073316Gold flowering 2147.787
CRR073317Gold flowering 397.323
CRR073318Tawny withering 1206.608
CRR073319Tawny withering 2159.454
CRR073320Tawny withering 3227.207