Gene detail

Detail information of GWHGAAZE003090

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99734.1	1.3093E-144	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068TUW2\|A0A068TUW2_COFCA	5E-145	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99734.1}
TAIR10	AT3G52270.1	1E-89	Transcription initiation factor IIF, beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	91924524	91929326	-
GWHAAZE00000001	mRNA	91924524	91929326	-
GWHAAZE00000001	exon	91924524	91924558	-
GWHAAZE00000001	exon	91924583	91924838	-
GWHAAZE00000001	exon	91926106	91926252	-
GWHAAZE00000001	exon	91926434	91926508	-
GWHAAZE00000001	exon	91926596	91926726	-
GWHAAZE00000001	exon	91926864	91926972	-
GWHAAZE00000001	exon	91929063	91929326	-
GWHAAZE00000001	CDS	91929063	91929326	-
GWHAAZE00000001	CDS	91926864	91926972	-
GWHAAZE00000001	CDS	91926596	91926726	-
GWHAAZE00000001	CDS	91926434	91926508	-
GWHAAZE00000001	CDS	91926106	91926252	-
GWHAAZE00000001	CDS	91924719	91924838	-
GWHAAZE00000001	three_prime_UTR	91924583	91924718	-
GWHAAZE00000001	three_prime_UTR	91924524	91924558	-

Transcript Sequence
>GWHTAAZE003096 ATGGACGACCACACCACCGGCACCGGCACCGGCACCAACAACAACAACACCGTCGTAAGTGGCGGTGGTCCATTGGAGACGAGTAAATCAGAGAGACACGTATGGCTAATGAAGTGCCCTCCCATGGTTTCTCGCTCCTTGCGGCAGCAATCTCCTTCATACACAACCAATGAAGATAATAATAATTCTTCTTCTGGCCCCGCCGCCAAGGTCATTGTCGCCGTCGATCCTCTCCTTCCTAACAACGATTTTTCTTCTACTCAGTTCACCATGGAATTGGCTGGTACTGAATCTGGAAATGTTCCCAAGTGTTACTCCATGGACATGTCTACAGATATCGTTCCAATGTCCGTGTTTTCTGAGTCATCTCAAGGGAGGCTTTCTGTGGAGGGGAAAATATATCACAAGTTTGACATGAAGCCTCATAATGAAAACCTTGAGAGCTATGGAAAACTTTGTCGTGAACGGACAAACAAATATATGACTAAAACCCGACAAATACAGGTGATTGACAATGATAATGGGTTACACATGAGGCCTATGCCAGGGATGATTGCTGTAAAGGCTACTGGATCCATTGATAAGAAAAAAGTTCCAGTGAAGGGGTCAGACACAAAAAGAACAAGAAGGGACCGCGGAGAGATGGAAGAGATCATGTTTAAGCTCTTTGAAAGGCAATCAAATTGGACTTTAAAACAGCTGCTCCACGAGACAGATCAACCTGAACAATTTCTGAAAGATTTGCTTAAAGACCTGTGCCTCTACAATAACAAGGGTACCAATCAAGGAACGTATGAGCTGAAGCCAGAATACAAGAGAACTGTCGAGGAACCTGACTCCAAATAGTTAATAATCTCATTCCCAAACTTTTTGCCGCACTTAGTTATCTGGATCTCAACAACCATAACAAAACTCTTGTTTACTCCTTTTCTACATATATATATATATACCTTGTTCATTCTCCCTACCCCTCAGAAAGAAAGAGAGAAGAAAAACAAGTTTTATTTTCTTTTGTTT

Network for GWHGAAZE003090

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17683.2	TFIIF_beta_N	31	129	8.60E-06
PF02270.16	TFIIF_beta	209	272	1.80E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03139	TFIIF2, GTF2F2, TFG2	Basal transcription factors	map03022

Gene Ontology

GO term	Ontology	Name
GO:0006367	biological_process	transcription initiation from RNA polymerase II promoter

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.649
	SRR3591706	second leaf	0.069
	SRR3591707	mature leaf	0.328
	SRR3591708	Shoot apex	1.320
	SRR3591709	Stem	0.856
	SRR3591710	White floral bud	2.334
	SRR3591711	White flower	0.116
	SRR3591712	Green floral bud	4.139
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	4.654
	SRR8316896	Juvenile bud stage	11.010
	SRR8316897	Juvenile bud stage	3.475
	SRR8316894	Third green stage	2.552
	SRR8316900	Third green stage	6.351
	SRR8316901	Third green stage	5.324
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	0.595
	SRR8316903	Complete white stage	0.379
	SRR8316902	Silver flowering stage	0.154
	SRR8316904	Silver flowering stage	0.033
	SRR8316905	Silver flowering stage	0.068
	SRR8316906	Gold flowering stage	0.534
	SRR8316907	Gold flowering stage	0.189
	SRR8316908	Gold flowering stage	0.327
SRP132670	SRR6706286	Control	1.263
	SRR6706287	Light intensity 50%	1.276
	SRR6706288	Light intensity 20%	1.422
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.464
	CNS0095593	Slightly white alabastrum(diploid) 2	6.071
	CNS0095594	Slightly white alabastrum(diploid) 3	9.119
	CNS0095595	Whole white alabastrum(diploid) 2	5.612
	CNS0095596	Whole white alabastrum(diploid) 3	7.588
	CNS0095597	Whole white alabastrum(diploid) 4	7.718
	CNS0095598	Silvery flower (diploied) 1	0.736
	CNS0095599	Silvery flower (diploied) 2	0.325
	CNS0095600	Silvery flower (diploied) 3	0.065
	CNS0095601	Golden flower (diploid) 1	0.477
	CNS0095602	Golden flower (diploid) 2	0.287
	CNS0095603	Golden flower (diploid) 3	0.360
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.281
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.050
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.098
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.562
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.064
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.360
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.206
	CNS0095612	Silvery flower (tetraploid) 3	0.170
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.135
CRA001975	CRR073297	Stem 1	2.677
	CRR073298	Stem 2	2.219
	CRR073299	Stem 3	1.822
	CRR073300	Leaf 1	1.418
	CRR073301	Leaf 2	1.399
	CRR073302	Leaf 3	0.904
	CRR073303	Juvenile bud 1	0.895
	CRR073304	Juvenile bud 2	1.010
	CRR073305	Juvenile bud 3	0.054
	CRR073306	Third green 1	0.181
	CRR073307	Third green 2	0.239
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.015
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.155
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.135
	CRR073315	Gold flowering 1	0.342
	CRR073316	Gold flowering 2	0.392
	CRR073317	Gold flowering 3	0.302
	CRR073318	Tawny withering 1	0.685
	CRR073319	Tawny withering 2	0.940
	CRR073320	Tawny withering 3	0.186