Gene detail

Detail information of GWHGAAZE003093

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG23927.1	Elongation factor 1-alpha [Gossypium arboreum]
COG	YP_004780353.1	translation elongation factor EF-1 subunit alpha
Swissprot	tr\|O64937\|EF1A_ORYSJ	Elongation factor 1-alpha
trEMBL	tr\|A0A061FML3\|A0A061FML3_THECC	Elongation factor 1-alpha {ECO:0000256\|RuleBase:RU004060}
TAIR10	AT5G60390.3	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92012786	92014317	-
GWHAAZE00000001	mRNA	92012786	92014317	-
GWHAAZE00000001	exon	92012786	92013673	-
GWHAAZE00000001	exon	92013856	92014317	-
GWHAAZE00000001	CDS	92013856	92014317	-
GWHAAZE00000001	CDS	92012786	92013673	-

Transcript Sequence
>GWHTAAZE003099 ATGGGTAAGGAGAAGTTTCACATCAACATTGTTGTCATTGGCCATGTCGATTCTGGCAAGTCAACCACTACTGGCCATCTCATCTACAAGCTAGGAGGTATTGATAAGCGTGTGATAGAGAGGTTTGAGAAGGAAGCGGCTGAGATGAACAAAAGGTCATTCAAGTATGCATGGGTGCTAGACAAGCTCAAGGCTGAGCGTGAGCGTGGAATCACCATTGACATTGCCTTGTGGAAGTTCGAAACAACCAAGTATTATTGCACTGTCATTGATGCTCCTGGACACCGTGACTTTATCAAGAACATGATTACTGGAACATCCCAGGCAGATTGTGCTGTCCTTATCATTGACTCCACCACTGGAGGCTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCCCTGCTTGCTTTCACTCTTGGTGTCAAGCAGATGATCTGTTGCTGCAACAAGATGGATGCCACAACTCCCAAGTATTCGAAGGCAAGGTATGATGAAATTGTAAAGGAGGTGTCTTCTTACCTGAAGAAGGTTGGGTACAACCCGGACAAGATCCCATTTGTCCCCATCTCTGGATTTGAAGGTGACAACATGATTGAGAGATCCACCAACCTCGACTGGTACAAGGGTCCTACCCTTCTTGAGGCCCTCGATCTCATCAACGAGCCAAAGAGACCCTCTGACAAACCACTCCGACTCCCTCTTCAGGACGTATACAAGATTGGAGGCATTGGAACTGTTCCTGTGGGTCGTGTTGAAACCGGTACCCTCAAGCCTGGTATGGTAGTCACTTTTGGTCCTTCTGGCCTGACCACTGAAGTCAAGTCTGTTGAGATGCACCATGAGTCTCTTGTGGAGGCTCTACCCGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCCGTTAAGGATCTCAAGCGTGGTTATGTTGCGTCTAATTCCAAAGACGATCCAGCCAAGGAGGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCATCCCGGTCAGATTGGAAATGGATATGCTCCTGTTCTTGATTGCCACACTTCTCACATCGCAGTCAAGTTTGCTCAGCTCCTGACCAAGATTGACAGGCGGTCTGGTAAGGAGCTCGAGAAGGAGCCGAAGTTCTTGAAGAATGGTGATGCTGGAATGATTAAGATGGTCCCCACAAAGCCCATGGTGGTAGAGACTTTCTCTGAGTATCCCCCACTTGGTCGATTTGCGGTAAGGGACATGAGACAAACTGTTGCTGTTGGAGTCATCAAGAATGTCGAGAAGAAGGAACCTACTGGTGCTAAAGTTACAAAAGCTGCTGCCAAGAAGTCTGGGAAGTGA

Network for GWHGAAZE003093

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	7	221	3.40E-53
PF03144.26	GTP_EFTU_D2	248	313	4.60E-14
PF03143.18	GTP_EFTU_D3	322	429	5.20E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03231	EEF1A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0003746	molecular_function	translation elongation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.712
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.037
	SRR3591708	Shoot apex	0.097
	SRR3591709	Stem	0.474
	SRR3591710	White floral bud	20.675
	SRR3591711	White flower	3.002
	SRR3591712	Green floral bud	60.359
	SRR3591713	Yellow flower	2.404
SRP173429	SRR8316895	Juvenile bud stage	67.527
	SRR8316896	Juvenile bud stage	135.339
	SRR8316897	Juvenile bud stage	33.088
	SRR8316894	Third green stage	26.072
	SRR8316900	Third green stage	75.856
	SRR8316901	Third green stage	88.347
	SRR8316898	Complete white stage	0.508
	SRR8316899	Complete white stage	1.361
	SRR8316903	Complete white stage	0.502
	SRR8316902	Silver flowering stage	0.991
	SRR8316904	Silver flowering stage	1.976
	SRR8316905	Silver flowering stage	1.246
	SRR8316906	Gold flowering stage	3.264
	SRR8316907	Gold flowering stage	4.939
	SRR8316908	Gold flowering stage	3.173
SRP132670	SRR6706286	Control	28.321
	SRR6706287	Light intensity 50%	30.367
	SRR6706288	Light intensity 20%	27.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	60.092
	CNS0095593	Slightly white alabastrum(diploid) 2	35.577
	CNS0095594	Slightly white alabastrum(diploid) 3	79.463
	CNS0095595	Whole white alabastrum(diploid) 2	37.877
	CNS0095596	Whole white alabastrum(diploid) 3	55.543
	CNS0095597	Whole white alabastrum(diploid) 4	37.593
	CNS0095598	Silvery flower (diploied) 1	0.989
	CNS0095599	Silvery flower (diploied) 2	2.596
	CNS0095600	Silvery flower (diploied) 3	2.938
	CNS0095601	Golden flower (diploid) 1	1.214
	CNS0095602	Golden flower (diploid) 2	3.876
	CNS0095603	Golden flower (diploid) 3	4.983
	CNS0095604	Slightly white alabastrum(tetraploid) 1	58.755
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.925
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.910
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.888
	CNS0095608	Whole white alabastrum(tetraploid) 2	56.474
	CNS0095609	Whole white alabastrum(tetraploid) 3	66.972
	CNS0095610	Silvery flower (tetraploid) 1	1.437
	CNS0095611	Silvery flower (tetraploid) 2	1.811
	CNS0095612	Silvery flower (tetraploid) 3	4.850
	CNS0095613	Golden flower (tetraploid) 1	3.565
	CNS0095614	Golden flower (tetraploid) 2	2.321
	CNS0095615	Golden flower (tetraploid) 3	2.559
CRA001975	CRR073297	Stem 1	101.507
	CRR073298	Stem 2	75.673
	CRR073299	Stem 3	101.146
	CRR073300	Leaf 1	42.696
	CRR073301	Leaf 2	52.336
	CRR073302	Leaf 3	50.179
	CRR073303	Juvenile bud 1	41.294
	CRR073304	Juvenile bud 2	44.996
	CRR073305	Juvenile bud 3	5.986
	CRR073306	Third green 1	16.694
	CRR073307	Third green 2	23.595
	CRR073308	Third green 3	13.663
	CRR073309	Second white 1	11.081
	CRR073310	Second white 2	7.781
	CRR073311	Second white 3	13.319
	CRR073312	Silver flowering 1	28.071
	CRR073313	Silver flowering 2	38.262
	CRR073314	Silver flowering 3	24.539
	CRR073315	Gold flowering 1	14.692
	CRR073316	Gold flowering 2	2.334
	CRR073317	Gold flowering 3	11.626
	CRR073318	Tawny withering 1	13.312
	CRR073319	Tawny withering 2	12.886
	CRR073320	Tawny withering 3	8.872