Gene detail

Detail information of GWHGAAZE003094

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002518073.1	elongation factor 1-alpha, putative [Ricinus communis]
COG	YP_004780353.1	translation elongation factor EF-1 subunit alpha
Swissprot	tr\|O49169\|EF1A_MANES	Elongation factor 1-alpha
trEMBL	tr\|B9RWF4\|B9RWF4_RICCO	Elongation factor 1-alpha {ECO:0000256\|RuleBase:RU004060}
TAIR10	AT5G60390.3	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92025142	92027070	-
GWHAAZE00000001	mRNA	92025142	92027070	-
GWHAAZE00000001	exon	92025142	92026029	-
GWHAAZE00000001	exon	92026609	92027070	-
GWHAAZE00000001	CDS	92026609	92027070	-
GWHAAZE00000001	CDS	92025142	92026029	-

Transcript Sequence
>GWHTAAZE003100 ATGGGCAAGGAGAAATTTCACATTAACATTGTCGTCATAGGTCATGTCGACTCTGGCAAGTCAACCACGACAGGTCATCTCATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGGTTTGAGAAGGAGGCCGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTGCTTGACAAGCTCAAGGCTGAGCGTGAGCGTGGTATCACCATCGACATTGCGCTATGGAAATTTGAGACCACCAAATACTACTGCACAGTCATTGATGCTCCTGGTCACCGAGACTTTATCAAGAACATGATCACCGGAACTTCTCAGGCAGATTGCGCTATCCTCATCATTGACTCCACCACTGGAGGTTTCGAAGCTGGTATTTCGAGGGATGGTCAAACCCGTGAGCACGCCTTGCTTGCCTTCACACTTGGTGTCAGGCAGATGATTTGTTGCTGCAACAAGATGGATGCTACAACCCCGAAGTATTCCAAGGCAAGGTATGATGAAATTGTCAAGGAGGTGTCGTCGTACCTGAAGAAGGTGGGATATAACCCTGACAAGATCCCATTTGTTCCCATATCAGGATTCGAAGGTGACAACATGATCGAGAGGTCTACAAACCTTGACTGGTACAAGGGCCCCACCCTTCTCGAGTCCCTTGACCAGCTCCAAGAGCCCAAGAGACCTTCAGACAAGCCCCTCCGTCTCCCTCTACAGGATGTGTACAAGATTGGAGGGATTGGAACTGTCCCAGTTGGGCGGGTTGAAACCGGTACCATAAAGCCCGGTATGGTCGTAACTTTTGGCCCAACTGGCCTAACCACCGAAGTCAAATCTGTTGAGATGCACCACGAGGCTCTCCAGGAGGCTCTACCTGGAGACAATGTGGGATTCAATGTGAAGAATGTTGCCGTTAAGGATCTCAAGCGTGGTTATGTTGCGTCTAATTCGAAGGACGATCCAGCCAAGGAGGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCACCCTGGTCAGATTGGAAATGGTTATGCCCCGGTCCTCGATTGCCACACCTCCCACATTGCTGTTAAATTTGCCGAGATTCTGACCAAGATTGACCGGCGGTCTGGCAAGGAGCTTGAGAAGGAGCCGAAATTTTTGAAGAACGGTGATGCCGGGTTTGTGAAAATGATCCCCACCAAGCCCATGGTGGTCGAGACTTTCTCCGAGTATCCACCACTTGGTCGATTTGCAGTTAGGGACATGAGGCAGACTGTGGCTGTGGGAGTCATCAAGAGTGTTGATAAGAAAGAACCCTCCGGAGCCAAGGTAACCAAGGCTGCTGCAAAGAAGACCGGCAAATGA

Network for GWHGAAZE003094

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	7	222	8.20E-53
PF03144.26	GTP_EFTU_D2	248	313	8.20E-15
PF03143.18	GTP_EFTU_D3	322	429	3.50E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03231	EEF1A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0003746	molecular_function	translation elongation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.486
	SRR3591706	second leaf	13.080
	SRR3591707	mature leaf	17.844
	SRR3591708	Shoot apex	43.136
	SRR3591709	Stem	28.610
	SRR3591710	White floral bud	30.525
	SRR3591711	White flower	63.911
	SRR3591712	Green floral bud	51.012
	SRR3591713	Yellow flower	40.666
SRP173429	SRR8316895	Juvenile bud stage	41.177
	SRR8316896	Juvenile bud stage	59.643
	SRR8316897	Juvenile bud stage	28.716
	SRR8316894	Third green stage	16.372
	SRR8316900	Third green stage	61.905
	SRR8316901	Third green stage	55.592
	SRR8316898	Complete white stage	13.230
	SRR8316899	Complete white stage	65.826
	SRR8316903	Complete white stage	18.442
	SRR8316902	Silver flowering stage	18.380
	SRR8316904	Silver flowering stage	20.660
	SRR8316905	Silver flowering stage	10.088
	SRR8316906	Gold flowering stage	48.066
	SRR8316907	Gold flowering stage	46.124
	SRR8316908	Gold flowering stage	45.072
SRP132670	SRR6706286	Control	55.745
	SRR6706287	Light intensity 50%	50.722
	SRR6706288	Light intensity 20%	52.358
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.430
	CNS0095593	Slightly white alabastrum(diploid) 2	53.158
	CNS0095594	Slightly white alabastrum(diploid) 3	44.861
	CNS0095595	Whole white alabastrum(diploid) 2	44.906
	CNS0095596	Whole white alabastrum(diploid) 3	37.370
	CNS0095597	Whole white alabastrum(diploid) 4	32.059
	CNS0095598	Silvery flower (diploied) 1	53.264
	CNS0095599	Silvery flower (diploied) 2	51.710
	CNS0095600	Silvery flower (diploied) 3	64.764
	CNS0095601	Golden flower (diploid) 1	65.646
	CNS0095602	Golden flower (diploid) 2	74.669
	CNS0095603	Golden flower (diploid) 3	71.214
	CNS0095604	Slightly white alabastrum(tetraploid) 1	57.160
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.422
	CNS0095606	Slightly white alabastrum(tetraploid) 3	111.892
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.553
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.848
	CNS0095609	Whole white alabastrum(tetraploid) 3	68.654
	CNS0095610	Silvery flower (tetraploid) 1	65.842
	CNS0095611	Silvery flower (tetraploid) 2	69.799
	CNS0095612	Silvery flower (tetraploid) 3	52.047
	CNS0095613	Golden flower (tetraploid) 1	33.365
	CNS0095614	Golden flower (tetraploid) 2	53.348
	CNS0095615	Golden flower (tetraploid) 3	26.684
CRA001975	CRR073297	Stem 1	87.301
	CRR073298	Stem 2	90.515
	CRR073299	Stem 3	94.075
	CRR073300	Leaf 1	97.494
	CRR073301	Leaf 2	99.287
	CRR073302	Leaf 3	104.611
	CRR073303	Juvenile bud 1	107.541
	CRR073304	Juvenile bud 2	57.505
	CRR073305	Juvenile bud 3	140.453
	CRR073306	Third green 1	19.015
	CRR073307	Third green 2	16.715
	CRR073308	Third green 3	19.690
	CRR073309	Second white 1	46.142
	CRR073310	Second white 2	34.568
	CRR073311	Second white 3	37.698
	CRR073312	Silver flowering 1	36.094
	CRR073313	Silver flowering 2	53.257
	CRR073314	Silver flowering 3	31.827
	CRR073315	Gold flowering 1	50.415
	CRR073316	Gold flowering 2	56.981
	CRR073317	Gold flowering 3	62.098
	CRR073318	Tawny withering 1	97.027
	CRR073319	Tawny withering 2	73.327
	CRR073320	Tawny withering 3	80.421