Gene detail

Detail information of GWHGAAZE003099

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG23927.1	Elongation factor 1-alpha [Gossypium arboreum]
COG	YP_004780353.1	translation elongation factor EF-1 subunit alpha
Swissprot	tr\|O64937\|EF1A_ORYSJ	Elongation factor 1-alpha
trEMBL	tr\|A0A061FML3\|A0A061FML3_THECC	Elongation factor 1-alpha {ECO:0000256\|RuleBase:RU004060}
TAIR10	AT5G60390.3	GTP binding Elongation factor Tu family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92143682	92145205	-
GWHAAZE00000001	mRNA	92143682	92145205	-
GWHAAZE00000001	exon	92143682	92144569	-
GWHAAZE00000001	exon	92144744	92145205	-
GWHAAZE00000001	CDS	92144744	92145205	-
GWHAAZE00000001	CDS	92143682	92144569	-

Transcript Sequence
>GWHTAAZE003105 ATGGGTAAGGAGAAGTTTCACATCAACATTGTTGTCATTGGCCATGTCGATTCTGGCAAGTCAACCACTACTGGCCATCTCATCTACAAGCTAGGAGGTATTGATAAGCGTGTGATAGAGAGGTTTGAGAAGGAAGCGGCTGAGATGAACAAAAGGTCATTCAAGTATGCATGGGTGCTAGACAAGCTCAAGGCTGAGCGTGAGCGTGGAATCACCATTGACATTGCCTTGTGGAAGTTCGAAACAACCAAGTATTATTGCACTGTCATTGATGCTCCTGGACACCGTGACTTTATCAAGAACATGATTACTGGAACATCCCAGGCAGATTGTGCTGTCCTTATCATTGACTCCACCACTGGAGGCTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAACATGCCCTGCTTGCTTTCACTCTTGGTGTCAAGCAGATGATCTGTTGCTGCAACAAGATGGATGCCACAACTCCCAAGTATTCGAAGGCAAGGTATGATGAAATTGTAAAGGAGGTGTCTTCTTACCTGAAGAAGGTTGGGTACAACCCGGACAAGATCCCATTTGTCCCCATCTCTGGATTTGAAGGTGACAACATGATTGAGAGATCCACCAACCTCGACTGGTACAAGGGTCCTACCCTTCTTGAGGCCCTCGATCTCATCAACGAGCCAAAGAGACCCTCTGACAAACCACTCCGACTCCCTCTTCAGGACGTATACAAGATTGGAGGCATTGGAACTGTTCCTGTGGGTCGTGTTGAAACCGGTACCCTCAAGCCTGGTATGGTAGTCACTTTTGGCCCTTCTGGCCTGACCACTGAAGTCAAGTCTGTTGAGATGCACCATGAGTCTCTTGTGGAGGCTCTACCCGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCCGTTAAGGATCTCAAGCGTGGTTATGTTGCGTCTAATTCCAAAGACGATCCAGCCAAGGAGGCTGCCAATTTCACTTCCCAAGTTATTATCATGAACCATCCCGGTCAGATTGGAAATGGATATGCTCCTGTTCTTGATTGCCACACTTCTCACATCGCAGTCAAGTTTGCTCAGCTCCTGACCAAGATTGACAGGCGGTCTGGTAAGGAGCTCGAGAAGGAGCCGAAGTTCTTGAAGAATGGTGATGCTGGAATGATTAAGATGGTTCCCACAAAGCCCATGGTGGTAGAGACTTTCTCTGAGTATCCCCCACTTGGCCGATTTGCGGTAAGGGACATGAGACAAACTGTTGCTGTTGGAGTCATCAAGAATGTCGAGAAGAAGGAACCTACTGGTGCTAAAGTTACAAAAGCTGCTGCCAAGAAGTCTGGGAAGTGA

Network for GWHGAAZE003099

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00009.28	GTP_EFTU	7	221	3.40E-53
PF03144.26	GTP_EFTU_D2	248	313	4.60E-14
PF03143.18	GTP_EFTU_D3	322	429	5.20E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03231	EEF1A	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006414	biological_process	translational elongation
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding
GO:0003746	molecular_function	translation elongation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.031
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.030
	SRR3591708	Shoot apex	0.204
	SRR3591709	Stem	0.459
	SRR3591710	White floral bud	26.389
	SRR3591711	White flower	3.589
	SRR3591712	Green floral bud	83.004
	SRR3591713	Yellow flower	3.532
SRP173429	SRR8316895	Juvenile bud stage	65.493
	SRR8316896	Juvenile bud stage	131.726
	SRR8316897	Juvenile bud stage	61.108
	SRR8316894	Third green stage	28.954
	SRR8316900	Third green stage	75.925
	SRR8316901	Third green stage	89.968
	SRR8316898	Complete white stage	0.430
	SRR8316899	Complete white stage	1.141
	SRR8316903	Complete white stage	0.703
	SRR8316902	Silver flowering stage	1.460
	SRR8316904	Silver flowering stage	2.655
	SRR8316905	Silver flowering stage	1.411
	SRR8316906	Gold flowering stage	4.696
	SRR8316907	Gold flowering stage	7.989
	SRR8316908	Gold flowering stage	5.216
SRP132670	SRR6706286	Control	29.022
	SRR6706287	Light intensity 50%	30.440
	SRR6706288	Light intensity 20%	28.209
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.795
	CNS0095593	Slightly white alabastrum(diploid) 2	36.464
	CNS0095594	Slightly white alabastrum(diploid) 3	82.601
	CNS0095595	Whole white alabastrum(diploid) 2	42.802
	CNS0095596	Whole white alabastrum(diploid) 3	56.078
	CNS0095597	Whole white alabastrum(diploid) 4	42.031
	CNS0095598	Silvery flower (diploied) 1	1.128
	CNS0095599	Silvery flower (diploied) 2	2.477
	CNS0095600	Silvery flower (diploied) 3	3.821
	CNS0095601	Golden flower (diploid) 1	1.779
	CNS0095602	Golden flower (diploid) 2	6.005
	CNS0095603	Golden flower (diploid) 3	5.771
	CNS0095604	Slightly white alabastrum(tetraploid) 1	114.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	99.784
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.364
	CNS0095607	Whole white alabastrum(tetraploid) 1	117.679
	CNS0095608	Whole white alabastrum(tetraploid) 2	118.231
	CNS0095609	Whole white alabastrum(tetraploid) 3	106.909
	CNS0095610	Silvery flower (tetraploid) 1	2.381
	CNS0095611	Silvery flower (tetraploid) 2	2.897
	CNS0095612	Silvery flower (tetraploid) 3	6.647
	CNS0095613	Golden flower (tetraploid) 1	6.364
	CNS0095614	Golden flower (tetraploid) 2	3.688
	CNS0095615	Golden flower (tetraploid) 3	3.604
CRA001975	CRR073297	Stem 1	96.893
	CRR073298	Stem 2	73.758
	CRR073299	Stem 3	97.144
	CRR073300	Leaf 1	41.246
	CRR073301	Leaf 2	51.370
	CRR073302	Leaf 3	50.519
	CRR073303	Juvenile bud 1	39.028
	CRR073304	Juvenile bud 2	46.167
	CRR073305	Juvenile bud 3	5.890
	CRR073306	Third green 1	18.930
	CRR073307	Third green 2	24.431
	CRR073308	Third green 3	14.510
	CRR073309	Second white 1	14.913
	CRR073310	Second white 2	9.977
	CRR073311	Second white 3	17.941
	CRR073312	Silver flowering 1	35.243
	CRR073313	Silver flowering 2	43.152
	CRR073314	Silver flowering 3	32.408
	CRR073315	Gold flowering 1	14.998
	CRR073316	Gold flowering 2	3.207
	CRR073317	Gold flowering 3	11.689
	CRR073318	Tawny withering 1	14.297
	CRR073319	Tawny withering 2	13.656
	CRR073320	Tawny withering 3	9.485