Detail information of GWHGAAZE003115


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007015502.14.446E-170Arogenate dehydratase/prephenate dehydratase 2 isoform 3 [Theobroma cacao]
COGYP_004172970.11E-65prephenate dehydratase
Swissprottr|Q9SSE7|AROD2_ARATH1E-158Arogenate dehydratase/prephenate dehydratase 2, chloroplastic (Precursor)
trEMBLtr|A0A061GUF7|A0A061GUF7_THECC2E-170Arogenate dehydratase/prephenate dehydratase 2 isoform 3 {ECO:0000313|EMBL:EOY33121.1}
TAIR10AT3G07630.24E-129arogenate dehydratase 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9242862392433431-
GWHAAZE00000001mRNA9242862392433431-
GWHAAZE00000001exon9243303092433431-
GWHAAZE00000001exon9243285292432907-
GWHAAZE00000001exon9243264092432732-
GWHAAZE00000001exon9243153392431733-
GWHAAZE00000001exon9243137092431450-
GWHAAZE00000001exon9243067592430770-
GWHAAZE00000001exon9243051992430596-
GWHAAZE00000001exon9243012992430218-
GWHAAZE00000001exon9242996292430029-
GWHAAZE00000001exon9242972792429818-
GWHAAZE00000001exon9242956892429643-
GWHAAZE00000001exon9242897192429014-
GWHAAZE00000001exon9242862392428836-
GWHAAZE00000001five_prime_UTR9243338892433431-
GWHAAZE00000001CDS9243303092433387-
GWHAAZE00000001CDS9243285292432907-
GWHAAZE00000001CDS9243264092432732-
GWHAAZE00000001CDS9243153392431733-
GWHAAZE00000001CDS9243137092431450-
GWHAAZE00000001CDS9243067592430770-
GWHAAZE00000001CDS9243051992430596-
GWHAAZE00000001CDS9243012992430218-
GWHAAZE00000001CDS9242996292430029-
GWHAAZE00000001CDS9242972792429818-
GWHAAZE00000001CDS9242956892429643-
GWHAAZE00000001CDS9242897192429014-
GWHAAZE00000001CDS9242881792428836-
GWHAAZE00000001three_prime_UTR9242862392428816-
Transcript Sequence

Network for GWHGAAZE003115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00800.19PDT1383112.50E-54
PF01842.26ACT3223601.60E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05359ADT, PDT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0009094biological_processL-phenylalanine biosynthetic process
GO:0004664molecular_functionprephenate dehydratase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf13.720
SRR3591706second leaf18.803
SRR3591707mature leaf19.367
SRR3591708Shoot apex22.764
SRR3591709Stem11.826
SRR3591710White floral bud9.913
SRR3591711White flower10.828
SRR3591712Green floral bud12.289
SRR3591713Yellow flower7.813
SRP173429 SRR8316895Juvenile bud stage 13.341
SRR8316896Juvenile bud stage 23.031
SRR8316897Juvenile bud stage 13.196
SRR8316894Third green stage 7.448
SRR8316900Third green stage 17.315
SRR8316901Third green stage 17.038
SRR8316898Complete white stage 3.770
SRR8316899Complete white stage 16.045
SRR8316903Complete white stage 11.534
SRR8316902Silver flowering stage5.393
SRR8316904Silver flowering stage10.152
SRR8316905Silver flowering stage4.042
SRR8316906Gold flowering stage 11.597
SRR8316907Gold flowering stage 12.727
SRR8316908Gold flowering stage 10.942
SRP132670SRR6706286Control14.318
SRR6706287Light intensity 50%14.172
SRR6706288Light intensity 20%14.380
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.091
CNS0095593Slightly white alabastrum(diploid) 215.812
CNS0095594Slightly white alabastrum(diploid) 315.822
CNS0095595Whole white alabastrum(diploid) 213.328
CNS0095596Whole white alabastrum(diploid) 316.470
CNS0095597Whole white alabastrum(diploid) 412.549
CNS0095598Silvery flower (diploied) 111.033
CNS0095599Silvery flower (diploied) 211.331
CNS0095600Silvery flower (diploied) 316.602
CNS0095601Golden flower (diploid) 112.751
CNS0095602Golden flower (diploid) 213.581
CNS0095603Golden flower (diploid) 314.866
CNS0095604Slightly white alabastrum(tetraploid) 121.502
CNS0095605Slightly white alabastrum(tetraploid) 218.546
CNS0095606Slightly white alabastrum(tetraploid) 317.416
CNS0095607Whole white alabastrum(tetraploid) 118.208
CNS0095608Whole white alabastrum(tetraploid) 212.709
CNS0095609Whole white alabastrum(tetraploid) 316.842
CNS0095610Silvery flower (tetraploid) 118.672
CNS0095611Silvery flower (tetraploid) 219.211
CNS0095612Silvery flower (tetraploid) 312.718
CNS0095613Golden flower (tetraploid) 19.241
CNS0095614Golden flower (tetraploid) 214.439
CNS0095615Golden flower (tetraploid) 39.658
CRA001975CRR073297Stem 111.306
CRR073298Stem 212.254
CRR073299Stem 311.217
CRR073300Leaf 113.093
CRR073301Leaf 210.227
CRR073302Leaf 310.608
CRR073303Juvenile bud 17.704
CRR073304Juvenile bud 24.560
CRR073305Juvenile bud 310.478
CRR073306Third green 14.568
CRR073307Third green 23.576
CRR073308Third green 33.737
CRR073309Second white 13.915
CRR073310Second white 23.557
CRR073311Second white 34.560
CRR073312Silver flowering 12.864
CRR073313Silver flowering 23.294
CRR073314Silver flowering 33.348
CRR073315Gold flowering 16.638
CRR073316Gold flowering 211.326
CRR073317Gold flowering 38.708
CRR073318Tawny withering 15.106
CRR073319Tawny withering 25.858
CRR073320Tawny withering 36.435