Gene detail

Detail information of GWHGAAZE003125

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006359335.1	1.3125E-166	PREDICTED: uncharacterized protein LOC102604792 [Solanum tuberosum]
trEMBL	tr\|M1D604\|M1D604_SOLTU	5E-167	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400082468}
TAIR10	AT3G45630.1	3E-32	RNA binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92548483	92554345	+
GWHAAZE00000001	mRNA	92548483	92554345	+
GWHAAZE00000001	exon	92548483	92548530	+
GWHAAZE00000001	exon	92548650	92548741	+
GWHAAZE00000001	exon	92550368	92550494	+
GWHAAZE00000001	exon	92551305	92552307	+
GWHAAZE00000001	exon	92552543	92552653	+
GWHAAZE00000001	exon	92553699	92554345	+
GWHAAZE00000001	CDS	92548483	92548530	+
GWHAAZE00000001	CDS	92548650	92548741	+
GWHAAZE00000001	CDS	92550368	92550494	+
GWHAAZE00000001	CDS	92551305	92552307	+
GWHAAZE00000001	CDS	92552543	92552653	+
GWHAAZE00000001	CDS	92553699	92554345	+

Transcript Sequence
>GWHTAAZE003131 GCATCATTTGGAACTGCAAAGTATTGCCATGCATGGTTGCGAAATGTGCCTTGCAACAATCCTGCTTGTCTATATTTACATAACATTGGTGCTGAAGAAGATAGTTTCGGTAAAGATGAAGTAGCTGCTGTGCATACAAGGAGTAGAGTTCAACAAATTGTTGGTGACACGCATAACTTGCAAAATCGCTCGGGAAATGTGTTGCCTCCACCAATAGACCAACACTGGAATATCAGCGATAATCCTGCTATCAGAAGTGTTCCAAAAGATTTAGCTATTGAGACAGTAAATTCCAGCGGCCAATTGATTTCTTCGTCTTCGTTCAATAATAAAGATGAGGGTATAGCAACACCTAACAAACTTACAACTTTTGTGGATATTGTTGGGCGGTCTTGTAGTTCTGGTTCTGAAAAAGATGGGAATATTGACGAGGATAGGATTTTCAATTTATGCTCCCAGTCTTCTTCAGTAAGCATTGATGAAGACTATAATCTTGAAGTTAAACACACTGTTGAAATGCCATGTAAAGAGTCATCTTCTAGTCACCTTGTCAATGGATTGCCCTCGAACAGCGAGTTTAAAGAGCCATTTAGGGAACCTTCAATTATTTCGGCATTTGGAAGATCCGATATAACACCAAATGATGCATCTGTTACTAAAGAACAATCTTATTTGATGTTAGATTCTGTTATAGAAGATTTACTATCTTTTGATGATCAAAGATTGAAGGATAATGACAGTTTAAGTGATCTTAGTGCGGGTTGTAACACTGTAAATACTCATGCTGACGAACCCTCTGTACAATTTACATGTGCAAATTCAATACCAAATGATGGATACAATGAGGGGAAATTCGAAAGTTCAGCTAAATCAGATAGGGTATATAGATGTTCTAACTTATTCTCTAATGAAGAGATAGTGGAGCATTTAAGAAGGCTTGATGATGATGATGAAATGACTAATGGTGAAAATTCTGCATTAGATGCTGTGAAGAGCAGCATAATTTCGAATCTTATGTCATTGGATTTGGATGCCTTTGATGAATCATCGGCCTTGTACAATGAAACCAATGGGCAGCAGGATTCTTCATGGAATTTCCATAACAGTGATCAATCGAGGTTCTCATTTGCAAAAACAGGGGGATCTTCAAGTCATTTAATTGATTTGGATTCTTCTTTTAGTAGCATTGGTCGAGAGTCAAAGATATGTTCTGTCCTTCAGGATTTTGGGGAGAACAAGGAGCATTACTTGCGCAAGCCTGGGTATAATGTATCTAGGGCTCAAAGCTTAATTCCACCAGGATTTTCACTGCCCTCTAGAGAACCACCACCAGGGTTTCCTGCATGTGAGAGAACAGACCAGGTTGTCCGTTCCACCTCTGGAAATCATTTGGTTAAGACTTCTTTGCCAAACAATCATTTTCAAAGGCAATCAGGAGGAACTATGAACATTAGGAATGTTGATTTAATAGATCCTGCAATATTGCTACTTGGTGGAGCTAAAACAACAAATGGGACAAGTAACTCGTGCCTAGATATGAGGTCACATTATGCTTCTTCACAACAGGGTTCTTTAGAAGATGAGGCAAGATTATGGCTTTTGACTCAACAATCAGCTGCTGGTCAACAAGTCCCAATGTTTCCTCAAACCTACTTGCAACAAACTACTTCTGTACATCAAGAACCGAGATATTCTAGTAGCATCGGGGACAGATTTTCTTCATGGGATGATATCTATGGTATATCTTCTCGTCGGCTGATTGATCAACAACGGACCTATAATCCATCTTCTTTTGCAGAGTTCACTCAGCAGAAATTTGGGAATGGACACATTTCAAATGGGGGTCATCATCAGCCCAGTTTGTATGAGGTGCAACACAGAAATGAAGTGGGGATGGGGATGGGCATGGGAGAAGTTCAGAGAAATGAGACATTAGGAGTGAACAAGTTGTTACCTACTGGCTATGGAGATCATATGTTCCAGATGCCCAGTTCAGGTGACGTATACACCAGAGTTTTTGGAATGTAA

Network for GWHGAAZE003125

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10643	CNOT4, NOT4, MOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.160
	SRR3591706	second leaf	32.215
	SRR3591707	mature leaf	22.806
	SRR3591708	Shoot apex	45.143
	SRR3591709	Stem	28.203
	SRR3591710	White floral bud	10.821
	SRR3591711	White flower	15.596
	SRR3591712	Green floral bud	13.981
	SRR3591713	Yellow flower	4.805
SRP173429	SRR8316895	Juvenile bud stage	14.676
	SRR8316896	Juvenile bud stage	16.758
	SRR8316897	Juvenile bud stage	9.094
	SRR8316894	Third green stage	7.738
	SRR8316900	Third green stage	15.740
	SRR8316901	Third green stage	14.755
	SRR8316898	Complete white stage	3.541
	SRR8316899	Complete white stage	19.396
	SRR8316903	Complete white stage	7.010
	SRR8316902	Silver flowering stage	1.450
	SRR8316904	Silver flowering stage	3.414
	SRR8316905	Silver flowering stage	0.909
	SRR8316906	Gold flowering stage	2.934
	SRR8316907	Gold flowering stage	3.077
	SRR8316908	Gold flowering stage	2.932
SRP132670	SRR6706286	Control	4.163
	SRR6706287	Light intensity 50%	5.610
	SRR6706288	Light intensity 20%	5.753
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.183
	CNS0095593	Slightly white alabastrum(diploid) 2	11.984
	CNS0095594	Slightly white alabastrum(diploid) 3	11.244
	CNS0095595	Whole white alabastrum(diploid) 2	10.487
	CNS0095596	Whole white alabastrum(diploid) 3	8.453
	CNS0095597	Whole white alabastrum(diploid) 4	7.834
	CNS0095598	Silvery flower (diploied) 1	23.157
	CNS0095599	Silvery flower (diploied) 2	17.586
	CNS0095600	Silvery flower (diploied) 3	12.150
	CNS0095601	Golden flower (diploid) 1	23.329
	CNS0095602	Golden flower (diploid) 2	16.924
	CNS0095603	Golden flower (diploid) 3	16.615
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.153
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.891
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.527
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.531
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.967
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.600
	CNS0095610	Silvery flower (tetraploid) 1	7.005
	CNS0095611	Silvery flower (tetraploid) 2	10.019
	CNS0095612	Silvery flower (tetraploid) 3	3.536
	CNS0095613	Golden flower (tetraploid) 1	2.924
	CNS0095614	Golden flower (tetraploid) 2	7.004
	CNS0095615	Golden flower (tetraploid) 3	2.025
CRA001975	CRR073297	Stem 1	9.687
	CRR073298	Stem 2	7.947
	CRR073299	Stem 3	8.299
	CRR073300	Leaf 1	6.547
	CRR073301	Leaf 2	5.721
	CRR073302	Leaf 3	4.152
	CRR073303	Juvenile bud 1	3.966
	CRR073304	Juvenile bud 2	2.386
	CRR073305	Juvenile bud 3	3.888
	CRR073306	Third green 1	0.398
	CRR073307	Third green 2	0.494
	CRR073308	Third green 3	0.561
	CRR073309	Second white 1	0.351
	CRR073310	Second white 2	0.328
	CRR073311	Second white 3	0.277
	CRR073312	Silver flowering 1	0.397
	CRR073313	Silver flowering 2	0.184
	CRR073314	Silver flowering 3	0.392
	CRR073315	Gold flowering 1	12.857
	CRR073316	Gold flowering 2	19.641
	CRR073317	Gold flowering 3	7.642
	CRR073318	Tawny withering 1	8.197
	CRR073319	Tawny withering 2	7.755
	CRR073320	Tawny withering 3	8.966