Gene detail

Detail information of GWHGAAZE003126

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010651097.1	1.6109E-131	PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9SK03\|RAP27_ARATH	8E-96	Ethylene-responsive transcription factor RAP2-7
trEMBL	tr\|A0A061FNN0\|A0A061FNN0_THECC	6E-128	Ethylene-responsive transcription factor RAP2-7, putative isoform 1 {ECO:0000313\|EMBL:EOY18508.1}
TAIR10	AT2G28550.1	3E-59	related to AP2.7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92555512	92559343	-
GWHAAZE00000001	mRNA	92555512	92559343	-
GWHAAZE00000001	exon	92555512	92555607	-
GWHAAZE00000001	exon	92556746	92556844	-
GWHAAZE00000001	exon	92557082	92557212	-
GWHAAZE00000001	exon	92557334	92557437	-
GWHAAZE00000001	exon	92557784	92557929	-
GWHAAZE00000001	exon	92558026	92558113	-
GWHAAZE00000001	exon	92558203	92558233	-
GWHAAZE00000001	exon	92558350	92558375	-
GWHAAZE00000001	exon	92558698	92559343	-
GWHAAZE00000001	five_prime_UTR	92559294	92559343	-
GWHAAZE00000001	CDS	92558698	92559293	-
GWHAAZE00000001	CDS	92558350	92558375	-
GWHAAZE00000001	CDS	92558203	92558233	-
GWHAAZE00000001	CDS	92558026	92558113	-
GWHAAZE00000001	CDS	92557784	92557929	-
GWHAAZE00000001	CDS	92557334	92557437	-
GWHAAZE00000001	CDS	92557082	92557212	-
GWHAAZE00000001	CDS	92556746	92556844	-
GWHAAZE00000001	CDS	92555512	92555607	-

Transcript Sequence
>GWHTAAZE003132 GAAGATACAGCTAGCTTCAATTGTATACGCACACAAAGAGAGAAAGAGAGATGTTGGACCTCAATGTTGATGTAGTCTCTGTAGATTCAACTTACTATGGGAGCCAGATGAAGATCGCCGTCCAGAAGCTTCCACTAGGTTACGGAGCTCATACTGACGATACCGGAACTTCGAGCTCGTCAGTCGTCAACACCGACGAATCTCCGCCTAGTGTCGGAGATGAAAACTCGAGCTCTACTCACACCAGGCCATCCGACTCTATCTCTGCTTTCAACTTCGATGTCTTCAACAGAGCTAAAGGCAATATTACTAACGAAATCAAAGACGAATGCTATGAGAATTCAGTGCCTCACTTAGTTACGAGGCAATTTTTTCCCATCGCCGGAGACGGAGGAGTCGGTGACTCTGATGAGTTTACTTCGAGGCCCAGGGCAGTCCCGGTGCCGGGGTTGTTGCGGCAGAAGTGGCTGAATCTGACTGTTCCGGAGTCAGGTGCGGTACCTGAGTTGAGAATTTTCGAGACACCGAAGCAGCAAGCACCACAACCACAGGTCAGGAAGAGTCGGCGGGGGCCTAGGTCTCGGAGCTCACAGTATCGTGGAGTTACATTTTACCGGAGGACTGGTCGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTGTATTTAGGTGGATTCGACACTGCTCATGCTGCAGCTAGAGCTTATGATCGAGCTGCAATTAAGTTCCGAGGAGTTGATGCTGATATTAACTTCAATATAAGCGACTATGATGAAGATATGCAACAGATGAAAAACTTGACAAAAGAAGAATTTGTCCACGTACTTCGTCGCCAGAGCTCTGGGTTCTCCAGAGGCAGTTCAAGATACAGAGGAGTAACCCTGCACAAGTGTGGGCGATGGGAGGCTCGAATGGGCCAATTGCTTGGAAAGAAGGCTTATGACAAAGCGGCTATTGATTGTAATGGACAGGAAGCAGTCACCAACTTTAATCCTAGTACCTATGAAGGGGACCCAAGTCTTGTTTCTAATCATGGAGGTAGTGGCCACAATCTTGATCTGAACCTCTGGGTTTCTCCCCCTCAAAACGGTCCAAAGGGGAATATCAATGTTAAGGATTTGTGCTTCCATTCTGCACCTTATCAATTGCCAGATGGAAAAAGACCAAGGGTTGACAGCTCTGCTCCTGTCAATGGCCTAACAATGCCATCTGAGTACATTCCCATTTGGCCTGCCAAGTATCCCGGATTCACTCCTAACTATGAGGAGGAAGAAGCAGTAATAGGAAAGAGAGAAGGTGAAGCAGTACCTTCGCTAGGTTTTACAAAGTGGGCATGGCAAATGCAGCAAGGCCATCATGGCATG

Network for GWHGAAZE003126

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	181	229	6.10E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.845
	SRR3591706	second leaf	38.239
	SRR3591707	mature leaf	60.519
	SRR3591708	Shoot apex	22.509
	SRR3591709	Stem	19.141
	SRR3591710	White floral bud	1.702
	SRR3591711	White flower	2.445
	SRR3591712	Green floral bud	1.171
	SRR3591713	Yellow flower	0.392
SRP173429	SRR8316895	Juvenile bud stage	2.298
	SRR8316896	Juvenile bud stage	2.187
	SRR8316897	Juvenile bud stage	1.104
	SRR8316894	Third green stage	1.210
	SRR8316900	Third green stage	0.517
	SRR8316901	Third green stage	0.727
	SRR8316898	Complete white stage	0.444
	SRR8316899	Complete white stage	2.514
	SRR8316903	Complete white stage	0.825
	SRR8316902	Silver flowering stage	0.494
	SRR8316904	Silver flowering stage	0.377
	SRR8316905	Silver flowering stage	0.318
	SRR8316906	Gold flowering stage	0.451
	SRR8316907	Gold flowering stage	0.950
	SRR8316908	Gold flowering stage	0.381
SRP132670	SRR6706286	Control	0.837
	SRR6706287	Light intensity 50%	1.260
	SRR6706288	Light intensity 20%	0.860
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.946
	CNS0095593	Slightly white alabastrum(diploid) 2	2.367
	CNS0095594	Slightly white alabastrum(diploid) 3	2.622
	CNS0095595	Whole white alabastrum(diploid) 2	1.588
	CNS0095596	Whole white alabastrum(diploid) 3	1.065
	CNS0095597	Whole white alabastrum(diploid) 4	2.035
	CNS0095598	Silvery flower (diploied) 1	4.426
	CNS0095599	Silvery flower (diploied) 2	4.305
	CNS0095600	Silvery flower (diploied) 3	0.944
	CNS0095601	Golden flower (diploid) 1	1.978
	CNS0095602	Golden flower (diploid) 2	1.561
	CNS0095603	Golden flower (diploid) 3	1.345
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.741
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.593
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.001
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.061
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.423
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.378
	CNS0095610	Silvery flower (tetraploid) 1	1.782
	CNS0095611	Silvery flower (tetraploid) 2	0.716
	CNS0095612	Silvery flower (tetraploid) 3	0.600
	CNS0095613	Golden flower (tetraploid) 1	0.289
	CNS0095614	Golden flower (tetraploid) 2	2.299
	CNS0095615	Golden flower (tetraploid) 3	0.603
CRA001975	CRR073297	Stem 1	2.657
	CRR073298	Stem 2	2.495
	CRR073299	Stem 3	1.135
	CRR073300	Leaf 1	0.931
	CRR073301	Leaf 2	2.128
	CRR073302	Leaf 3	1.024
	CRR073303	Juvenile bud 1	0.684
	CRR073304	Juvenile bud 2	0.800
	CRR073305	Juvenile bud 3	0.942
	CRR073306	Third green 1	0.207
	CRR073307	Third green 2	0.476
	CRR073308	Third green 3	0.225
	CRR073309	Second white 1	0.325
	CRR073310	Second white 2	0.341
	CRR073311	Second white 3	0.708
	CRR073312	Silver flowering 1	0.383
	CRR073313	Silver flowering 2	0.587
	CRR073314	Silver flowering 3	0.719
	CRR073315	Gold flowering 1	3.963
	CRR073316	Gold flowering 2	4.015
	CRR073317	Gold flowering 3	0.627
	CRR073318	Tawny withering 1	6.285
	CRR073319	Tawny withering 2	10.762
	CRR073320	Tawny withering 3	5.875