Gene detail

Detail information of GWHGAAZE003149

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010260128.1	1.41505E-83	PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Nelumbo nucifera]
COG	YP_004918718.1	8E-26	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
Swissprot	tr\|O80952\|PGPS1_ARATH	3E-79	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A061FUG7\|A0A061FUG7_THECC	2E-81	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase isoform 1 {ECO:0000313\|EMBL:EOY18459.1}
TAIR10	AT2G39290.1	2E-58	phosphatidylglycerolphosphate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	92853542	92858992	+
GWHAAZE00000001	mRNA	92853542	92858992	+
GWHAAZE00000001	exon	92853542	92854055	+
GWHAAZE00000001	exon	92855136	92855233	+
GWHAAZE00000001	exon	92855349	92855462	+
GWHAAZE00000001	exon	92855560	92855673	+
GWHAAZE00000001	exon	92856028	92856132	+
GWHAAZE00000001	exon	92857823	92857879	+
GWHAAZE00000001	exon	92857976	92858061	+
GWHAAZE00000001	exon	92858233	92858338	+
GWHAAZE00000001	exon	92858921	92858992	+
GWHAAZE00000001	CDS	92853542	92854055	+
GWHAAZE00000001	CDS	92855136	92855233	+
GWHAAZE00000001	CDS	92855349	92855462	+
GWHAAZE00000001	CDS	92855560	92855673	+
GWHAAZE00000001	CDS	92856028	92856132	+
GWHAAZE00000001	CDS	92857823	92857879	+
GWHAAZE00000001	CDS	92857976	92858061	+
GWHAAZE00000001	CDS	92858233	92858338	+
GWHAAZE00000001	CDS	92858921	92858992	+

Transcript Sequence
>GWHTAAZE003155 ATGCCCCCCACCCTCAAACTCACCATCGTCACCTCCATTTACGGCAAGCCTAATAAATGGGTCAGCACCCTCTCCTCCCTCGCCACCGCCACCTCTCATAACGCCGCACCGGCAATACCACGGAGGCGGCTGATGTGGGCTCGCGGGTGGAGGATAACACCGTGCGCACCCCTAGCCCCCTCAGCGCACGATAATAATAACAACAACAACAACTACTACTACTCCTCTCTACCCTATAGGAAGGTCTTAGGGTTTCGTGGTCAGAAAAGTTTCAGTTACTATTCCTCCGAAGAAAAAGGAGGAGAAGTATTAGGAGGAAGAGAATCTGCGACTGACATGGATAACAACAAAGATGGACTGTGGTTGGGGAATAACAAACGCTCGCCTCCGTCTTTAACGTCGCACAACAACCACCGCCTGAAACCGCCTTCTCAGCATCAGTCTGCTAAGTTGCTCACATTGCCTACGATCTTGACCTTCGGCCGTGTTGCTGCCGTTCCGCTTATCGTTGGCACTTTTTATATGAATAGTTGGTGGGGAACAACTACTACGACAAGTATCTTCATTGCTGCAGCAATTACAGATTGGCTTGATGGATATATTGCTCGAAAGATGAAGTTAGGGAGTGCATTTGGTGCATTTTTGGATCCAGTAGCTGATAAGGTATGCTTCCTCTGCTTCAGTATAAGTTCTGCAATTTCGGTTGAACTTGTTTACTCAAACACGCTTATGGTTGCTGCTACCTTGGTCTTGTTGTGTACAAGACCTCCGGACATTGCTACATTTGAACAAATGCCATGGCTATTGACTGTACCCTCAATTGCGATCATTGGTAGAGAGATGGAAATGCCAATAAGCAAGAGATTGAACCTGTTCAAGATAGTTAGTTGTATTAAGAAACTTATAGCAGTTACACAAAATCATCATATGACCTGCAAGCTCAAGATAACTATGTCTGCAGTTAGAGAATGGGCTGCTACGCAGAATAGTAAACTTTCAGAGGCTGTTGCTGTAAATAATTTGGGGAAGTGGAAAACAGCCTCACAAATGACCGCACTAACCATCCTCCTCGCAACCAGAGACAGCAGGGCTGGCTGTATGGTCGCTAGTTGTGTATATGAGGAAGATATGGAAAGTATTGATCAGGTAGCAGTATCTATGGCTTCGACTTTTTACAGTTCTCACGGCGTAAGGGTAGACGGCCTCCCAGTGCTATCGACTTCGTATGGCCCTGTGGCTTTGGCATTGCCGAAATTTATTCCTTAA

Network for GWHGAAZE003149

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01066.22	CDP-OH_P_transf	154	220	2.00E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00995	pgsA, PGS1	Metabolic pathways	map01100
K00995	pgsA, PGS1	Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0008654	biological_process	phospholipid biosynthetic process
GO:0016020	cellular_component	membrane
GO:0016780	molecular_function	phosphotransferase activity, for other substituted phosphate groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.834
	SRR3591706	second leaf	10.620
	SRR3591707	mature leaf	13.888
	SRR3591708	Shoot apex	12.553
	SRR3591709	Stem	15.667
	SRR3591710	White floral bud	19.574
	SRR3591711	White flower	18.850
	SRR3591712	Green floral bud	20.064
	SRR3591713	Yellow flower	12.879
SRP173429	SRR8316895	Juvenile bud stage	9.118
	SRR8316896	Juvenile bud stage	13.891
	SRR8316897	Juvenile bud stage	5.602
	SRR8316894	Third green stage	7.247
	SRR8316900	Third green stage	22.609
	SRR8316901	Third green stage	20.224
	SRR8316898	Complete white stage	7.364
	SRR8316899	Complete white stage	20.599
	SRR8316903	Complete white stage	8.595
	SRR8316902	Silver flowering stage	8.927
	SRR8316904	Silver flowering stage	11.005
	SRR8316905	Silver flowering stage	5.296
	SRR8316906	Gold flowering stage	19.655
	SRR8316907	Gold flowering stage	22.236
	SRR8316908	Gold flowering stage	19.517
SRP132670	SRR6706286	Control	20.224
	SRR6706287	Light intensity 50%	20.167
	SRR6706288	Light intensity 20%	21.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.687
	CNS0095593	Slightly white alabastrum(diploid) 2	13.448
	CNS0095594	Slightly white alabastrum(diploid) 3	17.160
	CNS0095595	Whole white alabastrum(diploid) 2	18.381
	CNS0095596	Whole white alabastrum(diploid) 3	20.241
	CNS0095597	Whole white alabastrum(diploid) 4	19.559
	CNS0095598	Silvery flower (diploied) 1	17.486
	CNS0095599	Silvery flower (diploied) 2	10.268
	CNS0095600	Silvery flower (diploied) 3	18.318
	CNS0095601	Golden flower (diploid) 1	12.111
	CNS0095602	Golden flower (diploid) 2	17.970
	CNS0095603	Golden flower (diploid) 3	17.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.032
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.973
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.861
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.904
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.331
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.812
	CNS0095610	Silvery flower (tetraploid) 1	24.168
	CNS0095611	Silvery flower (tetraploid) 2	27.208
	CNS0095612	Silvery flower (tetraploid) 3	30.035
	CNS0095613	Golden flower (tetraploid) 1	11.545
	CNS0095614	Golden flower (tetraploid) 2	19.245
	CNS0095615	Golden flower (tetraploid) 3	20.878
CRA001975	CRR073297	Stem 1	19.844
	CRR073298	Stem 2	17.782
	CRR073299	Stem 3	18.092
	CRR073300	Leaf 1	18.834
	CRR073301	Leaf 2	16.751
	CRR073302	Leaf 3	17.639
	CRR073303	Juvenile bud 1	19.111
	CRR073304	Juvenile bud 2	13.356
	CRR073305	Juvenile bud 3	16.518
	CRR073306	Third green 1	7.913
	CRR073307	Third green 2	5.820
	CRR073308	Third green 3	9.518
	CRR073309	Second white 1	13.363
	CRR073310	Second white 2	15.663
	CRR073311	Second white 3	13.279
	CRR073312	Silver flowering 1	13.670
	CRR073313	Silver flowering 2	11.274
	CRR073314	Silver flowering 3	11.581
	CRR073315	Gold flowering 1	10.797
	CRR073316	Gold flowering 2	9.891
	CRR073317	Gold flowering 3	12.816
	CRR073318	Tawny withering 1	19.912
	CRR073319	Tawny withering 2	12.490
	CRR073320	Tawny withering 3	14.959