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Detail information of GWHGAAZE003163
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002276028.1
0
PREDICTED: 3-ketoacyl-CoA synthase 12-like [Vitis vinifera]
COG
YP_003396763.1
9E-17
chalcone and stilbene synthase domain-containing protein
Swissprot
tr|Q9SIB2|KCS12_ARATH
0
3-ketoacyl-CoA synthase 12 (Precursor)
trEMBL
tr|A0A022RIH9|A0A022RIH9_ERYGU
0
Uncharacterized protein {ECO:0000313|EMBL:EYU39553.1} (Fragment)
TAIR10
AT2G28630.1
2E-155
3-ketoacyl-CoA synthase 12
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000001
gene
93052012
93053268
-
GWHAAZE00000001
mRNA
93052012
93053268
-
GWHAAZE00000001
exon
93052012
93053268
-
GWHAAZE00000001
CDS
93052012
93053268
-
Transcript Sequence
>GWHTAAZE003169 ATGCACTACGAGTGCTTCAAGCCTTCAAATGACCGGAAACTCACGACCGAATTCTCTGGCGACATCATTATGCGCAACAAAAACCTCGGCAACGAGCAGTACAAGTTCCTCTTGCGTGCCATTGTCAACTCCGGCCTCGGCGAGGAAACTTACGGACCGAGAAACATCATCACCGGCCGTGAAGAATCTCCGACCATCGCTGACGGAATCTCAGAGATGGACGAATTCTTCATCAGCACACTCGACAATCTCTTTCACAAAAGTGGAGTCTCGCCACGAGAAATCGATATACTCGTTGTGAATGTATCAATGCTTGCTTCGGTCCCTTCATTAACATCTCGAATAGTCAATCATTACAAGATGAGAGAAGACATTAAAGCGTTTAATCTCTCTGGTATGGGATGTAGTGCTAGCATCATATCGATTGATATAGTTCGAAACATTTTCAAAACTTGCAAAAATTCATTCGCGATTGTTTTGACCTCGGAATCAATAGCTCCAAATTGGTACACTGGCAGCGAGAAATCAATGATTCTCACCAACTGCTTGTTCCGATCCGGTGGATGTTCCATTTTACTCACGAACAACAAAGCAATGAAAAAACGATCCGCATTTAGTTTAAAGTGTTTGATTAGAACACATTTGGGGGCAATGGACGAAGCGCATAGCTGCTGCAAGCAGCAGGAGGATGACCATGGTCGCCTAGGGTTTTTCCTCAGTAAGAGCCTTACGAAGTCAGCCTCAAAAGCCTTTGCCGAGAACCTAAGAGATCTAGCCCCAAGGGTGTTGCCGCTTGGAGAGCTCGTTCGCTACATTTTGTTAAGTAGTGTGACAAATTTTGTTCAACGCTACTCTAAAGTGAGTAAAAAAGTGAGTTTGAATTTCAAAACTGGTGTGGATCATTTTTGCCTGCATCCAGGTGGGACCGCTGTGATCGATGGGATAAGGAAGAGCTTGGAGCTGAGCGAGAAAGACGTGGAGCCGTCGAGAATGACACTGCATAGATTTGGGAACACGTCAGCGAGTAGTTTGTGGTACGTGTTGGGGTACATGGAAGCGAAGAATAGGTTGAAGAAAGGCGATAGGGTTTTGATGATAGGTTTTGGATCTGGTTTTAAGTGTAATAGTTGTTTGTGGGAGGTTCTTAGGGATTTGGGTGGTGGTAACGTTTGGGGGGATTCTATTGGTAATTACCCTCCAAAAACACTAGTGAATCCTTATTTGGAGAAGTTCGGTTGGGTTTATGAAGACAACTAG
Network for GWHGAAZE003163
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF08392.13
FAE1_CUT1_RppA
2
273
1.10E-109
PF08541.11
ACP_syn_III_C
299
380
2.20E-14
Protein Sequence
>GWHPAAZE003166 MHYECFKPSNDRKLTTEFSGDIIMRNKNLGNEQYKFLLRAIVNSGLGEETYGPRNIITGREESPTIADGISEMDEFFISTLDNLFHKSGVSPREIDILVVNVSMLASVPSLTSRIVNHYKMREDIKAFNLSGMGCSASIISIDIVRNIFKTCKNSFAIVLTSESIAPNWYTGSEKSMILTNCLFRSGGCSILLTNNKAMKKRSAFSLKCLIRTHLGAMDEAHSCCKQQEDDHGRLGFFLSKSLTKSASKAFAENLRDLAPRVLPLGELVRYILLSSVTNFVQRYSKVSKKVSLNFKTGVDHFCLHPGGTAVIDGIRKSLELSEKDVEPSRMTLHRFGNTSASSLWYVLGYMEAKNRLKKGDRVLMIGFGSGFKCNSCLWEVLRDLGGGNVWGDSIGNYPPKTLVNPYLEKFGWVYEDN
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K15397
KCS
Metabolic pathways
map01100
Biosynthesis of secondary metabolites
map01110
Fatty acid elongation
map00062
Plant-pathogen interaction
map04626
Gene Ontology
GO term
Ontology
Name
GO:0006633
biological_process
fatty acid biosynthetic process
GO:0016020
cellular_component
membrane
GO:0016747
molecular_function
transferase activity, transferring acyl groups other than amino-acyl groups
GO:0003824
molecular_function
catalytic activity
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
1.656
SRR3591706
second leaf
3.904
SRR3591707
mature leaf
0.000
SRR3591708
Shoot apex
8.980
SRR3591709
Stem
0.000
SRR3591710
White floral bud
0.000
SRR3591711
White flower
0.118
SRR3591712
Green floral bud
0.494
SRR3591713
Yellow flower
0.000
SRP173429
SRR8316895
Juvenile bud stage
1.981
SRR8316896
Juvenile bud stage
1.703
SRR8316897
Juvenile bud stage
0.353
SRR8316894
Third green stage
0.359
SRR8316900
Third green stage
0.049
SRR8316901
Third green stage
0.250
SRR8316898
Complete white stage
0.000
SRR8316899
Complete white stage
0.000
SRR8316903
Complete white stage
0.000
SRR8316902
Silver flowering stage
0.000
SRR8316904
Silver flowering stage
0.000
SRR8316905
Silver flowering stage
0.000
SRR8316906
Gold flowering stage
0.000
SRR8316907
Gold flowering stage
0.000
SRR8316908
Gold flowering stage
0.000
SRP132670
SRR6706286
Control
0.041
SRR6706287
Light intensity 50%
0.034
SRR6706288
Light intensity 20%
0.026
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
0.238
CNS0095593
Slightly white alabastrum(diploid) 2
0.427
CNS0095594
Slightly white alabastrum(diploid) 3
0.266
CNS0095595
Whole white alabastrum(diploid) 2
0.073
CNS0095596
Whole white alabastrum(diploid) 3
0.000
CNS0095597
Whole white alabastrum(diploid) 4
0.000
CNS0095598
Silvery flower (diploied) 1
0.018
CNS0095599
Silvery flower (diploied) 2
0.338
CNS0095600
Silvery flower (diploied) 3
0.001
CNS0095601
Golden flower (diploid) 1
0.139
CNS0095602
Golden flower (diploid) 2
0.117
CNS0095603
Golden flower (diploid) 3
0.002
CNS0095604
Slightly white alabastrum(tetraploid) 1
0.042
CNS0095605
Slightly white alabastrum(tetraploid) 2
0.106
CNS0095606
Slightly white alabastrum(tetraploid) 3
0.214
CNS0095607
Whole white alabastrum(tetraploid) 1
0.000
CNS0095608
Whole white alabastrum(tetraploid) 2
0.000
CNS0095609
Whole white alabastrum(tetraploid) 3
0.000
CNS0095610
Silvery flower (tetraploid) 1
0.004
CNS0095611
Silvery flower (tetraploid) 2
0.000
CNS0095612
Silvery flower (tetraploid) 3
0.152
CNS0095613
Golden flower (tetraploid) 1
0.000
CNS0095614
Golden flower (tetraploid) 2
0.000
CNS0095615
Golden flower (tetraploid) 3
0.000
CRA001975
CRR073297
Stem 1
2.085
CRR073298
Stem 2
1.096
CRR073299
Stem 3
1.366
CRR073300
Leaf 1
0.252
CRR073301
Leaf 2
0.140
CRR073302
Leaf 3
0.110
CRR073303
Juvenile bud 1
0.000
CRR073304
Juvenile bud 2
0.030
CRR073305
Juvenile bud 3
0.104
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.000
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.000
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.129
CRR073316
Gold flowering 2
0.054
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.000
CRR073319
Tawny withering 2
0.000
CRR073320
Tawny withering 3
0.000