Gene detail

Detail information of GWHGAAZE003168

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011027102.1	4.6625E-117	PREDICTED: glutathione S-transferase DHAR2-like [Populus euphratica]
COG	YP_007172684.1	3E-18	glutathione S-transferase
Swissprot	tr\|Q9FRL8\|DHAR2_ARATH	1E-105	Glutathione S-transferase DHAR2
trEMBL	tr\|Q84UH4\|Q84UH4_TOBAC	4E-116	Dehydroascorbate reductase {ECO:0000313\|EMBL:AAL71857.1}
TAIR10	AT1G75270.1	2E-84	dehydroascorbate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93154524	93157515	+
GWHAAZE00000001	mRNA	93154524	93157515	+
GWHAAZE00000001	exon	93154524	93154644	+
GWHAAZE00000001	exon	93154763	93154853	+
GWHAAZE00000001	exon	93154937	93155161	+
GWHAAZE00000001	exon	93155812	93155929	+
GWHAAZE00000001	exon	93156005	93156145	+
GWHAAZE00000001	exon	93157227	93157515	+
GWHAAZE00000001	CDS	93154524	93154644	+
GWHAAZE00000001	CDS	93154763	93154853	+
GWHAAZE00000001	CDS	93154937	93155161	+
GWHAAZE00000001	CDS	93155812	93155929	+
GWHAAZE00000001	CDS	93156005	93156145	+
GWHAAZE00000001	CDS	93157227	93157313	+
GWHAAZE00000001	three_prime_UTR	93157314	93157515	+

Transcript Sequence
>GWHTAAZE003174 AGAAGCATATTATTATTATCCTCATTCATTCTTTCTCTTGAAAAAAACTCAGAGCATTCATCAGTGGCTATGGAGATCTGTGTTAAGGCTGCTGTTGGCGCTCCTGATGTTCTTGGGGACTGTCCATTCTCTCAAAGAGCACTTCTCACTTTGGAAGAAAAGAATATCCCCTACAAGATGCATCTCATCAATATTAGTGACAAACCCAAGTGGTTTCTAGAGGTGAACCCAGAAGGAAAAGTACCAGTGATCAAATGGGAGGAGAAATGGGTTAGTGACTCTGATGTGATAGTCGGACTCATTGAGGAGAAATACCCTCTCCCTCCTCTCTCTACACCCCCTCAATTCACCTCTGTGTATGCTCTCTCTCTCACACACACGCACACACAATATGATTTTGGTATTTGTGGAAGTAACTGTGATCTTTACATTCTTTTGGGTTCAAAAATATTCCCTTCTTTTGTCAAGTTTGTGAAGAGCAAGGATCCGAGTGACGAGTCAGAGCAAGCTTTGCTTGATGAGTTGAAGGCATTGGAAGAACACCTCAAGGCACACGGACCATATATCAGTGGTGAAAACGTTACTGCTGTTGACTTGAGTCTGGCACCGAAGCTGTACCATTTGGAGGTGGCTCTTGGCCATTTTAAGTGTTGGACTGTTCCTCAATGCCTGTCTCGTGTGCTTAATTACACGAAGCTGCTCTTCTCTCAAGAGTCATTCGAGAAAACAAAGACCGCTAAGGAATACGTGATCACAGGATGGGAGCACAAAGTTAATCCGTAACTTTTAATTTCTGAACAAATAATCACCCACTCTAAGTAGTGTGATAAAGTGTTTTATCTGCACCCAGTTATGCATGTGAATCTTAAATGAGAGCTATGTATGCATGCAAAATATCTCGGAGAAGCATTAGACAGTAGTTGCTTCTGTGTTAGTAATGTCTGAACCTTAAGCAAATCGGCCATATATGCTATTTATTTTAATA

Network for GWHGAAZE003168

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13417.7	GST_N_3	40	109	1.70E-16
PF13410.7	GST_C_2	166	218	1.50E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K21888	DHAR	Metabolic pathways	map01100
		Ascorbate and aldarate metabolism	map00053
		Glutathione metabolism	map00480

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	260.442
	SRR3591706	second leaf	9.967
	SRR3591707	mature leaf	4.713
	SRR3591708	Shoot apex	176.879
	SRR3591709	Stem	88.955
	SRR3591710	White floral bud	15.188
	SRR3591711	White flower	9.442
	SRR3591712	Green floral bud	46.269
	SRR3591713	Yellow flower	2.417
SRP173429	SRR8316895	Juvenile bud stage	46.261
	SRR8316896	Juvenile bud stage	49.492
	SRR8316897	Juvenile bud stage	21.678
	SRR8316894	Third green stage	22.406
	SRR8316900	Third green stage	46.944
	SRR8316901	Third green stage	54.046
	SRR8316898	Complete white stage	9.454
	SRR8316899	Complete white stage	25.566
	SRR8316903	Complete white stage	10.261
	SRR8316902	Silver flowering stage	4.986
	SRR8316904	Silver flowering stage	7.100
	SRR8316905	Silver flowering stage	6.444
	SRR8316906	Gold flowering stage	20.932
	SRR8316907	Gold flowering stage	22.605
	SRR8316908	Gold flowering stage	19.289
SRP132670	SRR6706286	Control	33.704
	SRR6706287	Light intensity 50%	38.931
	SRR6706288	Light intensity 20%	43.981
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	65.342
	CNS0095593	Slightly white alabastrum(diploid) 2	84.519
	CNS0095594	Slightly white alabastrum(diploid) 3	52.849
	CNS0095595	Whole white alabastrum(diploid) 2	40.447
	CNS0095596	Whole white alabastrum(diploid) 3	60.785
	CNS0095597	Whole white alabastrum(diploid) 4	35.011
	CNS0095598	Silvery flower (diploied) 1	6.303
	CNS0095599	Silvery flower (diploied) 2	9.166
	CNS0095600	Silvery flower (diploied) 3	5.988
	CNS0095601	Golden flower (diploid) 1	6.232
	CNS0095602	Golden flower (diploid) 2	11.313
	CNS0095603	Golden flower (diploid) 3	10.753
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	79.144
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.711
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.426
	CNS0095610	Silvery flower (tetraploid) 1	2.829
	CNS0095611	Silvery flower (tetraploid) 2	4.628
	CNS0095612	Silvery flower (tetraploid) 3	3.323
	CNS0095613	Golden flower (tetraploid) 1	4.932
	CNS0095614	Golden flower (tetraploid) 2	1.600
	CNS0095615	Golden flower (tetraploid) 3	0.847
CRA001975	CRR073297	Stem 1	87.691
	CRR073298	Stem 2	81.920
	CRR073299	Stem 3	93.019
	CRR073300	Leaf 1	52.495
	CRR073301	Leaf 2	49.970
	CRR073302	Leaf 3	73.656
	CRR073303	Juvenile bud 1	38.163
	CRR073304	Juvenile bud 2	40.123
	CRR073305	Juvenile bud 3	30.074
	CRR073306	Third green 1	10.924
	CRR073307	Third green 2	9.687
	CRR073308	Third green 3	8.904
	CRR073309	Second white 1	7.028
	CRR073310	Second white 2	3.406
	CRR073311	Second white 3	3.710
	CRR073312	Silver flowering 1	3.412
	CRR073313	Silver flowering 2	3.224
	CRR073314	Silver flowering 3	6.029
	CRR073315	Gold flowering 1	2.993
	CRR073316	Gold flowering 2	4.362
	CRR073317	Gold flowering 3	4.477
	CRR073318	Tawny withering 1	27.640
	CRR073319	Tawny withering 2	30.307
	CRR073320	Tawny withering 3	32.303