Gene detail

Detail information of GWHGAAZE003179

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010658604.1	PREDICTED: 2-oxoglutarate dehydrogenase, mitochondrial [Vitis vinifera]
COG	YP_006372428.1	2-oxoglutarate dehydrogenase E1 component
trEMBL	tr\|A0A059BCG3\|A0A059BCG3_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW63729.1}
TAIR10	AT3G55410.1	2-oxoglutarate dehydrogenase, E1 component

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93371051	93376204	-
GWHAAZE00000001	mRNA	93371051	93376204	-
GWHAAZE00000001	exon	93374654	93376204	-
GWHAAZE00000001	exon	93374212	93374438	-
GWHAAZE00000001	exon	93373794	93374126	-
GWHAAZE00000001	exon	93373275	93373521	-
GWHAAZE00000001	exon	93372543	93372671	-
GWHAAZE00000001	exon	93372239	93372454	-
GWHAAZE00000001	exon	93371973	93372096	-
GWHAAZE00000001	exon	93371051	93371488	-
GWHAAZE00000001	CDS	93374654	93376204	-
GWHAAZE00000001	CDS	93374212	93374438	-
GWHAAZE00000001	CDS	93373794	93374126	-
GWHAAZE00000001	CDS	93373275	93373521	-
GWHAAZE00000001	CDS	93372543	93372671	-
GWHAAZE00000001	CDS	93372239	93372454	-
GWHAAZE00000001	CDS	93371973	93372096	-
GWHAAZE00000001	CDS	93371250	93371488	-
GWHAAZE00000001	three_prime_UTR	93371051	93371249	-

Transcript Sequence
>GWHTAAZE003185 ATGGTATGGTATAGGGCTGGGTCCAGTGTAGCAAACCTTGCTATTAGGAGAACTGTAGCACAGGGTGGATCATATGCAACGAGAACACGGGTCAGTCCATCCCAGGGTCGTTATTTTCATTCAACAGTTTTTAAATCAAAGGCGCATGCTACGCCCGTCCCTCGACCTGTTCCACTCTCTCGGTTAACTGATAACTTTCTAGATGGGACAAGCAGCGTCTACCTAGAAGAACTTCAGAGGGCCTGGGAGGCTGACCCGAATAGCGTTGACGAGTCATGGGACAACTTCTTTAGGAACTTTGTTGGCCAGGCAGCCACTTCACCTGGAATTTCTGGCCAAACAATTCAAGAGAGCATGAGGTTACTGCTGCTAGTGAGAGCTTACCAGGTTAATGGTCATATGAAAGCCAAGTTGGATCCTCTGGGTTTGGAAGAGAGGCAGATTCCTGATGATTTAGACCCAGCTCTTTATGGGTTCACTGAAGCTGATCTTGATCGAGAATTCTTCATTGGCGTATGGAGGATGGCTGGGTTTTTATCCGAGAATCGCCCTGTGCAAACCCTTAGAGCAATATTGACACGGCTTGAACAGGCTTACTGCGGAACCATTGGTTATGAGTACATGCATATTCCCGATCGTGAAAAATGTAATTGGTTGAGAGACAAGATTGAGACTCCGACACCTATGCAATACGATCAGCAGCGACGTGAGGTTATACTTGACAGACTCATATGGAGTACTCAGTTTGAGAACTTCTTGGCCACTAAGTGGACTGCAGCCAAGAGATTTGGGCTTGAAGGTGGCGAGACCTTGATTCCAGGCATGAAGGAAATGTTTGATCGGTCAGCGGATCTTGGGGTTGAGGGCATCGTTATTGGAATGTCTCACAGAGGAAGATTGAATGTTTTGGGTAATGTTGTTCGGAAGCCCTTGCGACAGATCTTTAGTGAGTTTAGTGGTGGCACAAAGCCTGTGGATGAAGGTGGTCTTTATACAGGAACTGGCGATGTCAAGTATCACTTGGGAACTTCTTATGATAGGCCAACTAGGGGTGGGAGGAGAATTCATTTGTCATTGGTTGCAAATCCAAGTCACTTGGAAGCTGTAGATCCGGTGGTGGTTGGGAAAACTAGAGCCAAACAATATTACTCCCATGATGTGGATAGAACAAAGAATATGGGGGTATTAATTCATGGGGATGGTAGCTTTGCGGGCCAAGGTGTAGTCTATGAAACCCTGCATCTCAGTGCTCTTCCAAATTACACTACTGGTGGGACTATACATATTGTGGTGAATAATCAAGTGGCCTTTACAACTGATCCAAAGTCGGGAAGATCTTCTCAGTATTGTACTGATGTTGCCAAAGCCTTGAATGCTCCCATTTTTCATGTCAATGGAGATGATATTGAGGGAGTTGTACATGTTTGTGAGCTTGCAGCAGAGTGGAGACAGACATTCCACTCAGATGTGGTGGTTGATATTGTGTGTTATCGCCGATTTGGGCACAATGAGATTGACGAGCCCTCTTTTACCCAGCCCAAAATGTACAAGGTCATCAAGAATCATTCTTCTGCCCTGGAGATTTACAAAAAGTACCTTTTAGAATCTGGTCAGGTGAAAAAGGAAGATATTGATAGGATAGAAAACAAGGTCAATTCAATTCTAAATGAAGAATTCTTGGCCAGCAAAGATTATGTCCCAAAAAAAAGGGACTGGCTTTCAGCTTACTGGTCTGGGTTCAAATCACCTGAACAGCTTTCACGTATTAGAAACACTGGGGTCAACCCTGAGATTTTGAAGACCGTTGGCAAAGCAATCACATCCCTTCCAGATAATTTTAAGCCTCACAGAGCAGTAAAAAAGATTTTTTCAGATCGTGCAAAGATGATCGAAACAGGGGAGGGAATTGACTGGGCAGTAGGGGAAGCACTTGCATTTGCAACATTGCTTGTTGAAGGAAATCATGTCAGGTTGAGTGGTCAAGATGTTGAGAGAGGTACTTTTAGTCATCGGCATGCCGTAGTTCATGATCAGGAGACAGGGGAACGGTACTGTCCCTTGGACCATGTGATGACAAACCAGAATGAGGAGATGTTTACCGTAAGCAACAGCTCTCTTTCAGAATTTGGTGTTTTGGGATTTGAGTTGGGTTATTCAATGGAAAATCCTAATTCATTGGTATTGTGGGAGGCCCAATTTGGTGATTTTGCTAATGGAGCTCAAGTGATATTCGATCAGTTTGTGAGCAGTGGGGAGGCCAAGTGGTTGCGACAGAGTGGGTTAGTTGTGCTACTACCTCATGGTTATGATGGCCAGGGACCTGAACATTCAAGTGCACGATTGGAACGCTTCCTCCAGATGAGTGATGATAATCCCTATGTTATACCAGAGATGGATCCAACACTAAGGAAACAGATCCAGGAATGCAATTGGCAGGTTGTGAATGTTACCACTCCTGCAAATTATTTCCACGTATTGCGACGTCAAATACACAGGGAGTTCCGTAAGCCTCTCATTGTGATGTCTCCAAAGAACTTGCTCCGTCACAAGGATTGCAAGTCTAATCTATCTGAGTTCGATGATGTCCAAGGCCACCCAGGCTTTGACAAGCAAGGGACCCGATTTAAGCGCCTTATTAAGGACCAGAATGACCACTCGGATGTCGAGGAGGGTATCAGGCGTCTCATTCTTTGCTCTGGAAAGGTTTATTATGAGCTTGATGAAGAAAGAAAGAAAGTCAATGGCAAGGACATTGCAATATGTCGGGTGGAACAGCTTTGTCCCTTCCCGTACGACCTTGTCCAGCGTGAACTGAAGCGTTATCCATATGCAGAGATTGTTTGGTGCCAAGAAGAACCAATGAACATGGGGGCATACAGTTACATTGCACCGCGTCTTTGCACTGCCATGAAAGCAGTTGATAGAGGTAATGCTGATGACATCAAATACGTTGGCCGTTCCCCGTCCGCTGCCACAGCAACCGGTTTCTATCAGGTTCATGTGAAAGAACAGACTGAACTCGTTAAGAAAGCCGTACAGCCCGAACCAATTAACTATCCTCGTTGAAGCCTTCCAGTTTATATATATTCACTACATATATATCGAAACCAATTTAAAGAGTGGTGCTGCGTTTGTGGCTTCGCATGTTAGCGTGTGGTCTGAGAATGCTTCAGTAAGATTCTGCGGTTCTTTCTTCAGCATAGGTTTATGATATATAGTTGCTGTTTCTTTTATACGTGTTCTTGGTTTCACATATTATATAACC

Network for GWHGAAZE003179

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16078.6	2-oxogl_dehyd_N	64	102	9.80E-15
PF00676.21	E1_dh	244	565	7.00E-63
PF02779.25	Transket_pyr	635	850	1.50E-67
PF16870.6	OxoGdeHyase_C	871	1011	1.40E-50

Protein Sequence

>GWHPAAZE003182
MVWYRAGSSVANLAIRRTVAQGGSYATRTRVSPSQGRYFHSTVFKSKAHATPVPRPVPLSRLTDNFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEERQIPDDLDPALYGFTEADLDREFFIGVWRMAGFLSENRPVQTLRAILTRLEQAYCGTIGYEYMHIPDREKCNWLRDKIETPTPMQYDQQRREVILDRLIWSTQFENFLATKWTAAKRFGLEGGETLIPGMKEMFDRSADLGVEGIVIGMSHRGRLNVLGNVVRKPLRQIFSEFSGGTKPVDEGGLYTGTGDVKYHLGTSYDRPTRGGRRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSHDVDRTKNMGVLIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQVAFTTDPKSGRSSQYCTDVAKALNAPIFHVNGDDIEGVVHVCELAAEWRQTFHSDVVVDIVCYRRFGHNEIDEPSFTQPKMYKVIKNHSSALEIYKKYLLESGQVKKEDIDRIENKVNSILNEEFLASKDYVPKKRDWLSAYWSGFKSPEQLSRIRNTGVNPEILKTVGKAITSLPDNFKPHRAVKKIFSDRAKMIETGEGIDWAVGEALAFATLLVEGNHVRLSGQDVERGTFSHRHAVVHDQETGERYCPLDHVMTNQNEEMFTVSNSSLSEFGVLGFELGYSMENPNSLVLWEAQFGDFANGAQVIFDQFVSSGEAKWLRQSGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPYVIPEMDPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHREFRKPLIVMSPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDVEEGIRRLILCSGKVYYELDEERKKVNGKDIAICRVEQLCPFPYDLVQRELKRYPYAEIVWCQEEPMNMGAYSYIAPRLCTAMKAVDRGNADDIKYVGRSPSAATATGFYQVHVKEQTELVKKAVQPEPINYPR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00164	OGDH, sucA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Citrate cycle	map00020

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0055114	biological_process	oxidation-reduction process
GO:0004591	molecular_function	oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0030976	molecular_function	thiamine pyrophosphate binding
GO:0016624	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.787
	SRR3591706	second leaf	1.973
	SRR3591707	mature leaf	1.296
	SRR3591708	Shoot apex	5.232
	SRR3591709	Stem	6.308
	SRR3591710	White floral bud	6.368
	SRR3591711	White flower	8.423
	SRR3591712	Green floral bud	19.096
	SRR3591713	Yellow flower	10.858
SRP173429	SRR8316895	Juvenile bud stage	9.177
	SRR8316896	Juvenile bud stage	21.471
	SRR8316897	Juvenile bud stage	9.837
	SRR8316894	Third green stage	6.660
	SRR8316900	Third green stage	18.593
	SRR8316901	Third green stage	19.036
	SRR8316898	Complete white stage	0.504
	SRR8316899	Complete white stage	4.827
	SRR8316903	Complete white stage	1.123
	SRR8316902	Silver flowering stage	0.905
	SRR8316904	Silver flowering stage	1.320
	SRR8316905	Silver flowering stage	0.681
	SRR8316906	Gold flowering stage	2.856
	SRR8316907	Gold flowering stage	3.005
	SRR8316908	Gold flowering stage	2.407
SRP132670	SRR6706286	Control	13.543
	SRR6706287	Light intensity 50%	13.037
	SRR6706288	Light intensity 20%	12.406
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.050
	CNS0095593	Slightly white alabastrum(diploid) 2	15.121
	CNS0095594	Slightly white alabastrum(diploid) 3	23.144
	CNS0095595	Whole white alabastrum(diploid) 2	18.592
	CNS0095596	Whole white alabastrum(diploid) 3	22.999
	CNS0095597	Whole white alabastrum(diploid) 4	15.809
	CNS0095598	Silvery flower (diploied) 1	2.123
	CNS0095599	Silvery flower (diploied) 2	3.738
	CNS0095600	Silvery flower (diploied) 3	7.192
	CNS0095601	Golden flower (diploid) 1	4.444
	CNS0095602	Golden flower (diploid) 2	6.926
	CNS0095603	Golden flower (diploid) 3	6.988
	CNS0095604	Slightly white alabastrum(tetraploid) 1	29.030
	CNS0095605	Slightly white alabastrum(tetraploid) 2	23.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.189
	CNS0095608	Whole white alabastrum(tetraploid) 2	26.474
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.039
	CNS0095610	Silvery flower (tetraploid) 1	18.447
	CNS0095611	Silvery flower (tetraploid) 2	25.529
	CNS0095612	Silvery flower (tetraploid) 3	15.171
	CNS0095613	Golden flower (tetraploid) 1	7.433
	CNS0095614	Golden flower (tetraploid) 2	11.577
	CNS0095615	Golden flower (tetraploid) 3	4.730
CRA001975	CRR073297	Stem 1	12.462
	CRR073298	Stem 2	12.125
	CRR073299	Stem 3	10.827
	CRR073300	Leaf 1	17.948
	CRR073301	Leaf 2	15.796
	CRR073302	Leaf 3	13.313
	CRR073303	Juvenile bud 1	14.116
	CRR073304	Juvenile bud 2	6.664
	CRR073305	Juvenile bud 3	12.394
	CRR073306	Third green 1	2.828
	CRR073307	Third green 2	2.558
	CRR073308	Third green 3	2.759
	CRR073309	Second white 1	3.677
	CRR073310	Second white 2	2.444
	CRR073311	Second white 3	1.869
	CRR073312	Silver flowering 1	2.460
	CRR073313	Silver flowering 2	3.912
	CRR073314	Silver flowering 3	1.906
	CRR073315	Gold flowering 1	4.635
	CRR073316	Gold flowering 2	4.289
	CRR073317	Gold flowering 3	4.602
	CRR073318	Tawny withering 1	9.705
	CRR073319	Tawny withering 2	8.814
	CRR073320	Tawny withering 3	10.266