Gene detail

Detail information of GWHGAAZE003192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN79495.1	2.85994E-88	hypothetical protein VITISV_020749 [Vitis vinifera]
Swissprot	tr\|Q9M2U1\|DOF36_ARATH	1E-51	Dof zinc finger protein DOF3.6
trEMBL	tr\|A5BZE7\|A5BZE7_VITVI	1E-88	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN79495.1}
TAIR10	AT3G55370.3	1E-41	OBF-binding protein 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93630154	93630924	+
GWHAAZE00000001	mRNA	93630154	93630924	+
GWHAAZE00000001	exon	93630154	93630924	+
GWHAAZE00000001	CDS	93630154	93630924	+

Transcript Sequence
>GWHTAAZE003198 ATGACAGACAGAGCCAGGCTGGCAAAGTTCCCGCAGCCTGAGACAGCACTGAAATGCCCGCGGTGTGACTCCATAAACACAAAATTCTGTTACTTCAATAATTACAGCCTCTCACAGCCACGTCACTTTTGCAAGACCTGCCGCCGGTACTGGACACGAGGCGGCGCTCTCCGGAATGTCCCCGTCGGTGGTGGCTGCCGCCGGAACAAAAGAACCAAAGGTGGTAATAGTGGATCAAAGTCTCCAGCCGCATCTACAGACCATTCCAATAATAGTACTACACCAGTTTCCTCTAATAGCTGCTCCACTAAATTTATTCCCCATATTACCCCTCATCAACCGCCACAGTTACCTTTTATGCCGTCCTTACATCATGATTATGGAGCTGGAGATATTGGATTCAGTTTTGCCAGTGGCTCGGCTGGAGCTGATGTGGAAGTGCCGGTCATTGGCGGTGGTCGATTTATTGAGCAGTGGAGATTGCAGCAGTTTCAGCAATTCCAGCTCTCAGCTGGTGTGGAGCCGACGGCTGGGATTTATCAGTTCGGGAATGAAAATAATGTTGAGCCGCTGAGTTATATTGGGGCAGCCACTGGAGTCAGTCAGCTTGGGGTGGTGAAGTCAGAAGAGAATCAAGGAGGGGTAAATTTGTCAAGGAACATTTTGGGTATGCAAATGCAAGGAAATGATGAGTACTGGGGTGGTAATATCAATGCATGGACTACTGATCTCAATGGCTTCGCTCCTTCCAATACAAGCCAGCTCTTGTGA

Network for GWHGAAZE003192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	16	71	1.30E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.673
	SRR3591706	second leaf	9.593
	SRR3591707	mature leaf	4.140
	SRR3591708	Shoot apex	15.974
	SRR3591709	Stem	4.049
	SRR3591710	White floral bud	24.703
	SRR3591711	White flower	5.123
	SRR3591712	Green floral bud	16.397
	SRR3591713	Yellow flower	1.831
SRP173429	SRR8316895	Juvenile bud stage	7.284
	SRR8316896	Juvenile bud stage	10.325
	SRR8316897	Juvenile bud stage	4.732
	SRR8316894	Third green stage	5.665
	SRR8316900	Third green stage	17.535
	SRR8316901	Third green stage	18.720
	SRR8316898	Complete white stage	8.464
	SRR8316899	Complete white stage	25.624
	SRR8316903	Complete white stage	12.536
	SRR8316902	Silver flowering stage	1.527
	SRR8316904	Silver flowering stage	4.504
	SRR8316905	Silver flowering stage	2.510
	SRR8316906	Gold flowering stage	2.059
	SRR8316907	Gold flowering stage	1.075
	SRR8316908	Gold flowering stage	3.435
SRP132670	SRR6706286	Control	21.913
	SRR6706287	Light intensity 50%	21.163
	SRR6706288	Light intensity 20%	21.929
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.939
	CNS0095593	Slightly white alabastrum(diploid) 2	13.757
	CNS0095594	Slightly white alabastrum(diploid) 3	10.756
	CNS0095595	Whole white alabastrum(diploid) 2	11.905
	CNS0095596	Whole white alabastrum(diploid) 3	14.146
	CNS0095597	Whole white alabastrum(diploid) 4	12.967
	CNS0095598	Silvery flower (diploied) 1	5.696
	CNS0095599	Silvery flower (diploied) 2	6.387
	CNS0095600	Silvery flower (diploied) 3	7.357
	CNS0095601	Golden flower (diploid) 1	3.645
	CNS0095602	Golden flower (diploid) 2	5.669
	CNS0095603	Golden flower (diploid) 3	4.475
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.479
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.890
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.333
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.260
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.932
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.506
	CNS0095610	Silvery flower (tetraploid) 1	10.811
	CNS0095611	Silvery flower (tetraploid) 2	7.309
	CNS0095612	Silvery flower (tetraploid) 3	9.959
	CNS0095613	Golden flower (tetraploid) 1	2.397
	CNS0095614	Golden flower (tetraploid) 2	10.769
	CNS0095615	Golden flower (tetraploid) 3	1.799
CRA001975	CRR073297	Stem 1	8.708
	CRR073298	Stem 2	10.123
	CRR073299	Stem 3	13.527
	CRR073300	Leaf 1	19.284
	CRR073301	Leaf 2	16.280
	CRR073302	Leaf 3	12.567
	CRR073303	Juvenile bud 1	29.505
	CRR073304	Juvenile bud 2	47.598
	CRR073305	Juvenile bud 3	24.868
	CRR073306	Third green 1	20.241
	CRR073307	Third green 2	30.236
	CRR073308	Third green 3	18.801
	CRR073309	Second white 1	2.065
	CRR073310	Second white 2	3.024
	CRR073311	Second white 3	1.609
	CRR073312	Silver flowering 1	1.261
	CRR073313	Silver flowering 2	0.569
	CRR073314	Silver flowering 3	0.851
	CRR073315	Gold flowering 1	2.547
	CRR073316	Gold flowering 2	2.646
	CRR073317	Gold flowering 3	3.785
	CRR073318	Tawny withering 1	2.685
	CRR073319	Tawny withering 2	5.635
	CRR073320	Tawny withering 3	4.114