Gene detail

Detail information of GWHGAAZE003205

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091519.1	0	PREDICTED: probable serine/threonine-protein kinase NAK [Sesamum indicum]
COG	YP_007201433.1	3E-24	protein kinase family protein
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|A0A068TVN1\|A0A068TVN1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDP00097.1}
TAIR10	AT1G07570.2	2E-140	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93850525	93852171	+
GWHAAZE00000001	mRNA	93850525	93852171	+
GWHAAZE00000001	exon	93850525	93850794	+
GWHAAZE00000001	exon	93850884	93851019	+
GWHAAZE00000001	exon	93851189	93851331	+
GWHAAZE00000001	exon	93851449	93851572	+
GWHAAZE00000001	exon	93851858	93852171	+
GWHAAZE00000001	CDS	93850525	93850794	+
GWHAAZE00000001	CDS	93850884	93851019	+
GWHAAZE00000001	CDS	93851189	93851331	+
GWHAAZE00000001	CDS	93851449	93851572	+
GWHAAZE00000001	CDS	93851858	93852171	+

Transcript Sequence
>GWHTAAZE003211 AAGGCTTTATCTCCCTCAGTTCCACTTACACCTCGAAGCCAAGATGAAATTTTGCAATCTTCAAATTTGAAGAGCTTTGGCTTTAATGATCTCAGAACCTCCACTAGGAACTTCCGGCCAGATAGTGTGCTGGGAGAAGGCGGCTTCGGCTGTGTTTTCAAAGGGTGGATTGACGAGAAAACATTCACTGCCGCCAAGCCTGGCACTGGCATGGTCATTGCCGTTAAGAGACTAAACCAAGTTGGTTTACAAGGTCACAAAGAATGGCTGACAGAAATTAATTATTTGGGGCAGCTTTATCATCCTAATCTTGTGAAACTTGTTGGGTACTGCTTAGAGGACGAGCACCGGCTTTTGGTTTACGAGTTCATGCCTAGAGGTAGCTTGGAGAATCATCTATTTAGGAGGAGTTCTTACTTCCAACCGCTCCCTTGGAACCTCCGTATGAAGGTTGCTCTTGGTGCTGCAAAGGGACTCGCATATCTTCACAGTCCAGAAGCAAGAGTGATATATCGCGATTTCAAGTCATCTAATATCTTGATTGATTCCAAGTACAACGCAAAGCTTTCTGATTTCGGGTTGGCCAAGGACGGGCCAGTGGATGGCAAAAGCCATGTTTCTACAAGGGTTATGGGCACCTATGGTTACGCAGCTCCTGAGTATATGGTCACAGGTCATTTGACAGCGAAAAGTGACATCTACAGTTTCGGGGTTGTTCTTGTGGAAATGCTGACGGGGCGGAGAGTAGTTGACAAGAATCGTCCGCCCGGTGAACAGAACCTTATTCCATGGGCTTTGCCTTACCTAACGAGCAAACGTAGGATTTTGCAGGTTATGGATGCAAGAATTCAAGGCCAGTACTCATTAGCTGTGGCAGCGAGAGCGGGTGCGCTCGCAGTCAAATGCCTTGCGCTGGATCCCAAGCATAGGCCTAACATGGGTGAGGTTGTAAAGGCATTGGAGCAACTTCAAGAGTTGAAAGACTAG

Network for GWHGAAZE003205

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	41	318	5.40E-46

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.155
	SRR3591706	second leaf	0.580
	SRR3591707	mature leaf	4.318
	SRR3591708	Shoot apex	1.757
	SRR3591709	Stem	5.132
	SRR3591710	White floral bud	6.220
	SRR3591711	White flower	23.207
	SRR3591712	Green floral bud	5.621
	SRR3591713	Yellow flower	113.390
SRP173429	SRR8316895	Juvenile bud stage	3.698
	SRR8316896	Juvenile bud stage	5.382
	SRR8316897	Juvenile bud stage	2.052
	SRR8316894	Third green stage	2.285
	SRR8316900	Third green stage	6.907
	SRR8316901	Third green stage	7.831
	SRR8316898	Complete white stage	4.719
	SRR8316899	Complete white stage	20.257
	SRR8316903	Complete white stage	8.292
	SRR8316902	Silver flowering stage	8.560
	SRR8316904	Silver flowering stage	9.688
	SRR8316905	Silver flowering stage	5.594
	SRR8316906	Gold flowering stage	59.941
	SRR8316907	Gold flowering stage	34.439
	SRR8316908	Gold flowering stage	61.304
SRP132670	SRR6706286	Control	13.459
	SRR6706287	Light intensity 50%	11.394
	SRR6706288	Light intensity 20%	11.839
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.029
	CNS0095593	Slightly white alabastrum(diploid) 2	5.038
	CNS0095594	Slightly white alabastrum(diploid) 3	5.556
	CNS0095595	Whole white alabastrum(diploid) 2	4.965
	CNS0095596	Whole white alabastrum(diploid) 3	4.124
	CNS0095597	Whole white alabastrum(diploid) 4	5.607
	CNS0095598	Silvery flower (diploied) 1	13.369
	CNS0095599	Silvery flower (diploied) 2	8.074
	CNS0095600	Silvery flower (diploied) 3	21.072
	CNS0095601	Golden flower (diploid) 1	14.844
	CNS0095602	Golden flower (diploid) 2	41.909
	CNS0095603	Golden flower (diploid) 3	43.666
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.015
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.136
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.424
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.909
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.484
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.231
	CNS0095610	Silvery flower (tetraploid) 1	20.658
	CNS0095611	Silvery flower (tetraploid) 2	20.331
	CNS0095612	Silvery flower (tetraploid) 3	8.533
	CNS0095613	Golden flower (tetraploid) 1	28.664
	CNS0095614	Golden flower (tetraploid) 2	38.138
	CNS0095615	Golden flower (tetraploid) 3	63.552
CRA001975	CRR073297	Stem 1	8.147
	CRR073298	Stem 2	7.289
	CRR073299	Stem 3	8.829
	CRR073300	Leaf 1	10.492
	CRR073301	Leaf 2	9.479
	CRR073302	Leaf 3	8.535
	CRR073303	Juvenile bud 1	10.163
	CRR073304	Juvenile bud 2	9.491
	CRR073305	Juvenile bud 3	13.903
	CRR073306	Third green 1	4.088
	CRR073307	Third green 2	2.830
	CRR073308	Third green 3	2.588
	CRR073309	Second white 1	4.549
	CRR073310	Second white 2	3.735
	CRR073311	Second white 3	5.728
	CRR073312	Silver flowering 1	10.700
	CRR073313	Silver flowering 2	13.552
	CRR073314	Silver flowering 3	13.547
	CRR073315	Gold flowering 1	9.179
	CRR073316	Gold flowering 2	14.881
	CRR073317	Gold flowering 3	9.214
	CRR073318	Tawny withering 1	15.038
	CRR073319	Tawny withering 2	14.967
	CRR073320	Tawny withering 3	7.630