Gene detail

Detail information of GWHGAAZE003209

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283264.1	0	PREDICTED: protein FIZZY-RELATED 3 isoform X1 [Vitis vinifera]
COG	YP_007143558.1	1E-27	(myosin heavy-chain) kinase
Swissprot	tr\|Q8LPL5\|FZR3_ARATH	0	Protein FIZZY-RELATED 3
trEMBL	tr\|D7TLR8\|D7TLR8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31655.3}
TAIR10	AT5G13840.2	0	FIZZY-related 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	93924179	93927095	+
GWHAAZE00000001	mRNA	93924179	93927095	+
GWHAAZE00000001	exon	93924179	93924703	+
GWHAAZE00000001	exon	93925199	93925321	+
GWHAAZE00000001	exon	93925450	93925554	+
GWHAAZE00000001	exon	93925672	93925851	+
GWHAAZE00000001	exon	93925934	93925996	+
GWHAAZE00000001	exon	93926091	93926285	+
GWHAAZE00000001	exon	93926433	93926534	+
GWHAAZE00000001	exon	93926683	93926745	+
GWHAAZE00000001	exon	93926859	93926927	+
GWHAAZE00000001	exon	93927042	93927095	+
GWHAAZE00000001	CDS	93924179	93924703	+
GWHAAZE00000001	CDS	93925199	93925321	+
GWHAAZE00000001	CDS	93925450	93925554	+
GWHAAZE00000001	CDS	93925672	93925851	+
GWHAAZE00000001	CDS	93925934	93925996	+
GWHAAZE00000001	CDS	93926091	93926285	+
GWHAAZE00000001	CDS	93926433	93926534	+
GWHAAZE00000001	CDS	93926683	93926745	+
GWHAAZE00000001	CDS	93926859	93926927	+
GWHAAZE00000001	CDS	93927042	93927095	+

Transcript Sequence
>GWHTAAZE003215 ATGGATTCCAATCAAAGAAGAAAGAGTGGCATAAACCTCCCAGCTGGAATGTCCGAAACCTCACTTCGCCTCGAACCCTTTTCCCCTTCTTCAACTCCTCCTTCATTTAGGGCTGCCCAAAATGCAGCTTCACCTCGAACAATGTCACCAAGAACTATATCAAACCTTTCCTCACCATCAAAATCAGTGACTTGTAGTGACAGGTTCATTCCGTGTAGATCCTCGTCGAGGCTTCACACTTTCGGGCTCATCGAGAAGGCGTCACCTGTGAAAGAAGGCGGAAACGAGGCCTATTCCAGGTTATTGAAGTCTGAACTATTTGGATCTGATTTTGGGTGTTTTTCTCCTGCAGGTAACATGGGATCGCCGATAAGTCCGAGCAAGAATATGCTGAGGTTCAAGACGGATCATTCCTGCCCGAATTCCCCTTACTCGCCTTCCATTTTGGGGCACGATAGTGGGTTGTCTTCGGAGTCTACTACGCCACCCAAGCCGCCGAGGAAGGTGTCCAAGACTCCCCACAAGGTTCTGGATGCACCTGAACTTCAAGATGATTTCTACTTGAATCTCGTCGATTGGTCCTCGCAGAATGTACTTGCTGTTGGACTAGGCACTTGTGTTTATCTGTGGACTGCGTCAACCAGCAGAGTGACAAAGCTGTGCGACTTGGGACCTAATGACGGTGTGTGCTCAGTCCAGTGGACCCGAGAGGGTTCGTACATATCCATCGGTACAAACCTTGGCCAAGTTCAGGTTTGGGATGGAACGCAGTGCAAGAGGGTGCGAACTATGAGTGGCCATCAAACAAGAACTGGGGTATTGGCATGGAGTTCACGCATATTGTCTTCTGGAAGTAGAGACCGCAACATACTTCAACACGATCTTCGTGTGGCCAATGACTACGTCAGCAAGCTTGTTGGCCACAAATCAGAGGTATGCGGGCTAAAATGGTCTCATGATGACCGGGAGCTTGCATCGGGTGGCAACGACAATCAGCTTTTGGTTTGGAACCAGCATTCTCAACAACCAGCATTAAGATTAACGGAGCACACGGCTGCTGTAAAGGCAATTACGTGGTCACCTCACCAGAGTGGGCTTCTTGCATCTGGTGGTGGAACTGCCGATCGATGCATTCGATTCTGGAACACTACTAGTGGCAATCAGTTAAACAGCATTGACACTGGGAGCCAGGTTTGCAATCTAGCATGGAGTAAGAATGTGAATGAAATAGTTAGCACTCATGGGTATTCACAGAATCAAATTATGGTGTGGAAGTACCCGTCAATGGGAAAGGTTGCTACTCTAACGGGGCATAGTATGCGAGTACTATACCTTGCAATGTCACCCGATGGTCAGACAATTGTGACTGGAGCAGGGGATGAGACGCTGCGATTCTGGAATGTATTCCCATCTGTGAAAACACCGGCAGCAGTGAGGGATACAGGACTATGGTCACTAGGAAGAACTCACATTCGATGA

Network for GWHGAAZE003209

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	302	337	3.10E-05
PF00400.33	WD40	346	382	0.014
PF00400.33	WD40	432	467	0.00024

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K03364	CDH1	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.188
	SRR3591706	second leaf	15.815
	SRR3591707	mature leaf	6.540
	SRR3591708	Shoot apex	102.287
	SRR3591709	Stem	28.116
	SRR3591710	White floral bud	11.631
	SRR3591711	White flower	7.673
	SRR3591712	Green floral bud	13.202
	SRR3591713	Yellow flower	2.782
SRP173429	SRR8316895	Juvenile bud stage	49.831
	SRR8316896	Juvenile bud stage	57.867
	SRR8316897	Juvenile bud stage	26.002
	SRR8316894	Third green stage	20.332
	SRR8316900	Third green stage	31.157
	SRR8316901	Third green stage	38.646
	SRR8316898	Complete white stage	9.554
	SRR8316899	Complete white stage	36.726
	SRR8316903	Complete white stage	21.770
	SRR8316902	Silver flowering stage	5.714
	SRR8316904	Silver flowering stage	9.417
	SRR8316905	Silver flowering stage	4.050
	SRR8316906	Gold flowering stage	8.145
	SRR8316907	Gold flowering stage	10.520
	SRR8316908	Gold flowering stage	7.414
SRP132670	SRR6706286	Control	44.092
	SRR6706287	Light intensity 50%	55.637
	SRR6706288	Light intensity 20%	66.682
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	46.860
	CNS0095593	Slightly white alabastrum(diploid) 2	40.322
	CNS0095594	Slightly white alabastrum(diploid) 3	39.768
	CNS0095595	Whole white alabastrum(diploid) 2	28.935
	CNS0095596	Whole white alabastrum(diploid) 3	24.059
	CNS0095597	Whole white alabastrum(diploid) 4	22.711
	CNS0095598	Silvery flower (diploied) 1	40.356
	CNS0095599	Silvery flower (diploied) 2	35.921
	CNS0095600	Silvery flower (diploied) 3	5.880
	CNS0095601	Golden flower (diploid) 1	39.093
	CNS0095602	Golden flower (diploid) 2	13.304
	CNS0095603	Golden flower (diploid) 3	13.015
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.812
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	68.957
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.153
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.102
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.476
	CNS0095610	Silvery flower (tetraploid) 1	15.569
	CNS0095611	Silvery flower (tetraploid) 2	10.405
	CNS0095612	Silvery flower (tetraploid) 3	16.692
	CNS0095613	Golden flower (tetraploid) 1	12.501
	CNS0095614	Golden flower (tetraploid) 2	13.798
	CNS0095615	Golden flower (tetraploid) 3	6.093
CRA001975	CRR073297	Stem 1	50.709
	CRR073298	Stem 2	47.811
	CRR073299	Stem 3	21.000
	CRR073300	Leaf 1	60.225
	CRR073301	Leaf 2	55.147
	CRR073302	Leaf 3	13.559
	CRR073303	Juvenile bud 1	19.404
	CRR073304	Juvenile bud 2	6.674
	CRR073305	Juvenile bud 3	29.874
	CRR073306	Third green 1	2.703
	CRR073307	Third green 2	1.677
	CRR073308	Third green 3	4.890
	CRR073309	Second white 1	0.404
	CRR073310	Second white 2	0.704
	CRR073311	Second white 3	0.966
	CRR073312	Silver flowering 1	0.687
	CRR073313	Silver flowering 2	0.192
	CRR073314	Silver flowering 3	0.185
	CRR073315	Gold flowering 1	2.199
	CRR073316	Gold flowering 2	4.319
	CRR073317	Gold flowering 3	1.074
	CRR073318	Tawny withering 1	31.075
	CRR073319	Tawny withering 2	46.960
	CRR073320	Tawny withering 3	44.834