Detail information of GWHGAAZE003215


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004307484.11.0612E-136PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Fragaria vesca subsp. vesca]
Swissprottr|Q9M2S6|SDIR1_ARATH8E-121E3 ubiquitin-protein ligase SDIR1
trEMBLtr|A0A088AY56|A0A088AY56_TOBAC1E-134RING-H2 finger protein {ECO:0000313|EMBL:AFP44677.1}
TAIR10AT3G55530.12E-72RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9408411194087310-
GWHAAZE00000001mRNA9408411194087310-
GWHAAZE00000001exon9408411194084236-
GWHAAZE00000001exon9408517894085303-
GWHAAZE00000001exon9408545494085499-
GWHAAZE00000001exon9408610294086216-
GWHAAZE00000001exon9408647894086661-
GWHAAZE00000001exon9408685594086907-
GWHAAZE00000001exon9408699594087049-
GWHAAZE00000001exon9408723394087310-
GWHAAZE00000001CDS9408723394087310-
GWHAAZE00000001CDS9408699594087049-
GWHAAZE00000001CDS9408685594086907-
GWHAAZE00000001CDS9408647894086661-
GWHAAZE00000001CDS9408610294086216-
GWHAAZE00000001CDS9408545494085499-
GWHAAZE00000001CDS9408517894085303-
GWHAAZE00000001CDS9408411194084236-
Transcript Sequence

Network for GWHGAAZE003215

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_21972395.10E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf41.678
SRR3591706second leaf21.693
SRR3591707mature leaf32.489
SRR3591708Shoot apex34.931
SRR3591709Stem67.037
SRR3591710White floral bud73.350
SRR3591711White flower38.707
SRR3591712Green floral bud58.114
SRR3591713Yellow flower37.535
SRP173429 SRR8316895Juvenile bud stage 9.535
SRR8316896Juvenile bud stage 17.607
SRR8316897Juvenile bud stage 9.735
SRR8316894Third green stage 8.826
SRR8316900Third green stage 23.888
SRR8316901Third green stage 30.571
SRR8316898Complete white stage 10.007
SRR8316899Complete white stage 31.598
SRR8316903Complete white stage 12.257
SRR8316902Silver flowering stage12.934
SRR8316904Silver flowering stage14.886
SRR8316905Silver flowering stage4.854
SRR8316906Gold flowering stage 19.398
SRR8316907Gold flowering stage 22.844
SRR8316908Gold flowering stage 26.265
SRP132670SRR6706286Control22.160
SRR6706287Light intensity 50%21.139
SRR6706288Light intensity 20%20.966
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.379
CNS0095593Slightly white alabastrum(diploid) 232.585
CNS0095594Slightly white alabastrum(diploid) 341.167
CNS0095595Whole white alabastrum(diploid) 254.981
CNS0095596Whole white alabastrum(diploid) 359.327
CNS0095597Whole white alabastrum(diploid) 466.315
CNS0095598Silvery flower (diploied) 116.245
CNS0095599Silvery flower (diploied) 219.912
CNS0095600Silvery flower (diploied) 319.160
CNS0095601Golden flower (diploid) 115.306
CNS0095602Golden flower (diploid) 215.037
CNS0095603Golden flower (diploid) 317.389
CNS0095604Slightly white alabastrum(tetraploid) 138.036
CNS0095605Slightly white alabastrum(tetraploid) 250.301
CNS0095606Slightly white alabastrum(tetraploid) 314.247
CNS0095607Whole white alabastrum(tetraploid) 168.727
CNS0095608Whole white alabastrum(tetraploid) 262.833
CNS0095609Whole white alabastrum(tetraploid) 328.946
CNS0095610Silvery flower (tetraploid) 114.371
CNS0095611Silvery flower (tetraploid) 214.398
CNS0095612Silvery flower (tetraploid) 314.059
CNS0095613Golden flower (tetraploid) 118.063
CNS0095614Golden flower (tetraploid) 219.630
CNS0095615Golden flower (tetraploid) 316.165
CRA001975CRR073297Stem 114.667
CRR073298Stem 212.743
CRR073299Stem 311.305
CRR073300Leaf 130.990
CRR073301Leaf 225.733
CRR073302Leaf 317.601
CRR073303Juvenile bud 128.753
CRR073304Juvenile bud 218.165
CRR073305Juvenile bud 317.556
CRR073306Third green 122.456
CRR073307Third green 225.085
CRR073308Third green 324.198
CRR073309Second white 18.589
CRR073310Second white 219.845
CRR073311Second white 316.001
CRR073312Silver flowering 114.059
CRR073313Silver flowering 219.994
CRR073314Silver flowering 312.917
CRR073315Gold flowering 127.175
CRR073316Gold flowering 228.005
CRR073317Gold flowering 326.369
CRR073318Tawny withering 137.065
CRR073319Tawny withering 236.561
CRR073320Tawny withering 335.302