Detail information of GWHGAAZE003222


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002277994.12.17307E-87PREDICTED: LOB domain-containing protein 33 [Vitis vinifera]
Swissprottr|Q9LHS8|LBD33_ARATH5E-58LOB domain-containing protein 33
trEMBLtr|D7TLQ3|D7TLQ3_VITVI8E-88Putative uncharacterized protein {ECO:0000313|EMBL:CBI31640.3}
TAIR10AT5G06080.14E-47LOB domain-containing protein 33

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9417093494171694+
GWHAAZE00000001mRNA9417093494171694+
GWHAAZE00000001exon9417093494171212+
GWHAAZE00000001exon9417135394171694+
GWHAAZE00000001CDS9417093494171212+
GWHAAZE00000001CDS9417135394171694+
Transcript Sequence

Network for GWHGAAZE003222

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB71032.00E-35
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.194
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.148
SRR3591709Stem0.197
SRR3591710White floral bud8.386
SRR3591711White flower0.878
SRR3591712Green floral bud3.252
SRR3591713Yellow flower0.275
SRP173429 SRR8316895Juvenile bud stage 0.089
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.019
SRR8316900Third green stage 0.000
SRR8316901Third green stage 0.069
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.217
SRR8316903Complete white stage 0.462
SRR8316902Silver flowering stage0.490
SRR8316904Silver flowering stage0.304
SRR8316905Silver flowering stage0.229
SRR8316906Gold flowering stage 0.212
SRR8316907Gold flowering stage 0.130
SRR8316908Gold flowering stage 0.690
SRP132670SRR6706286Control0.982
SRR6706287Light intensity 50%1.371
SRR6706288Light intensity 20%1.033
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.000
CNS0095594Slightly white alabastrum(diploid) 30.000
CNS0095595Whole white alabastrum(diploid) 20.129
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.576
CNS0095598Silvery flower (diploied) 10.382
CNS0095599Silvery flower (diploied) 22.789
CNS0095600Silvery flower (diploied) 30.191
CNS0095601Golden flower (diploid) 10.457
CNS0095602Golden flower (diploid) 20.863
CNS0095603Golden flower (diploid) 30.840
CNS0095604Slightly white alabastrum(tetraploid) 10.054
CNS0095605Slightly white alabastrum(tetraploid) 20.087
CNS0095606Slightly white alabastrum(tetraploid) 30.135
CNS0095607Whole white alabastrum(tetraploid) 10.960
CNS0095608Whole white alabastrum(tetraploid) 25.414
CNS0095609Whole white alabastrum(tetraploid) 31.471
CNS0095610Silvery flower (tetraploid) 10.528
CNS0095611Silvery flower (tetraploid) 21.693
CNS0095612Silvery flower (tetraploid) 32.878
CNS0095613Golden flower (tetraploid) 10.336
CNS0095614Golden flower (tetraploid) 20.149
CNS0095615Golden flower (tetraploid) 30.889
CRA001975CRR073297Stem 10.169
CRR073298Stem 20.284
CRR073299Stem 30.000
CRR073300Leaf 10.684
CRR073301Leaf 20.000
CRR073302Leaf 30.440
CRR073303Juvenile bud 15.443
CRR073304Juvenile bud 29.684
CRR073305Juvenile bud 30.302
CRR073306Third green 12.733
CRR073307Third green 26.114
CRR073308Third green 31.842
CRR073309Second white 10.018
CRR073310Second white 20.194
CRR073311Second white 30.597
CRR073312Silver flowering 10.851
CRR073313Silver flowering 23.177
CRR073314Silver flowering 31.150
CRR073315Gold flowering 12.175
CRR073316Gold flowering 20.043
CRR073317Gold flowering 31.406
CRR073318Tawny withering 11.399
CRR073319Tawny withering 21.208
CRR073320Tawny withering 32.530