Gene detail

Detail information of GWHGAAZE003226

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011091509.1	6.0775E-171	PREDICTED: protein phosphatase 2C 37-like [Sesamum indicum]
COG	YP_003709340.1	8E-18	serine/threonine PP2C protein phosphatase
Swissprot	tr\|Q9LNW3\|P2C03_ARATH	5E-131	Protein phosphatase 2C 3
trEMBL	tr\|Q8RVG0\|Q8RVG0_TOBAC	8E-170	Protein phosphatase 2C {ECO:0000313\|EMBL:CAC84141.2}
TAIR10	AT1G07430.1	1E-100	highly ABA-induced PP2C gene 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94266774	94268425	+
GWHAAZE00000001	mRNA	94266774	94268425	+
GWHAAZE00000001	exon	94266774	94267262	+
GWHAAZE00000001	exon	94267357	94267419	+
GWHAAZE00000001	exon	94267494	94267700	+
GWHAAZE00000001	exon	94267878	94267983	+
GWHAAZE00000001	exon	94268100	94268425	+
GWHAAZE00000001	CDS	94266774	94267262	+
GWHAAZE00000001	CDS	94267357	94267419	+
GWHAAZE00000001	CDS	94267494	94267700	+
GWHAAZE00000001	CDS	94267878	94267983	+
GWHAAZE00000001	CDS	94268100	94268425	+

Transcript Sequence
>GWHTAAZE003232 ATGGCTGGGATGTGCTGCGGAGTAGTAGGTGAGATTGAAACCTCGGCGCCTGTTGAGCCGAGTTCAAGACCCACACGGCGGAGAAGAACGGGAATTAATCGGTTTAACATCACTCCCGCAGATATGGCCACTTCTCCGTCCAAGAATGACCGGAAACGTCAGAAAATAGATGCTATCTCGCCGCCGCAGGAGCAAGAGCAGGAGAATGAATCTCAGTGTTGTGACATAAATATAAATCTGATGAAGGAGAGCGGAGAATTAGAGAGGAAAACTAGTCGGCGTGAATCCACTTCGTCATCTAAGAGAATTAAGCCCGAGTTACCGCCTGTGCATGAGTTATTTCCTAAGTTCGGTTTTACATCTGTAAAAGGAAGGAGGAGAGACATGGAAGATGCAGTCTCTATTCATCCGTCATTTTGCGGTGAAGATCGTTATATTTCAAGTGAAACACATTTTTTTGGTGTTTACGATGGCCATGGTTGCTCACATGTGGCGATGAAATGCAATGATCGAATGCACGAGATAGTGAAAGACGAGCTACAGAGTCGCGAAGAGGTAACACAATGGAACAGTACCAGCGCTGGCGTGTCCGGCTCGAATTGCAGGTGTGAGCTTCAAACTCCGCGGTGTGACGCTGTTGGATCCACTGCCGTAGTTGCCGTCGTGACGCCGGAGAAGATCATCGTCTCCAACTGTGGCGATTCCCGTGCAGTCCTTTGCCGCAACGGCTTAGCTATTCCCCTCTCTTCTGATCATAAGCCAGATCGAGCAGACGAACTGGTTCGAATAGAAGAAGCCGGTGGTCGAGTAATATATTGGGACGGTCCTCGTGTTCTAGGAATACTGGCCATGTCTAGAGCAATTGGTGATAGTTACTTGAAGCCGTACGTGATACCGGAACCGGATGTAACCATAACGGATCGGACGGCGGAGGATGAGTGCCTGATATTGGCAAGCGACGGTTTGTGGGACGTGGTATCCAACGACACCGCGTGCAGCGTTGCGCGCATGTGCCTGCGTGCGCAGAGACAACTTTTCCCGCCGCGTTCTCCGGGAAGTAACACTGCCACCGGGGAAAGCTCCGACAAGGCTTGCTCAGATGCATCTATTCTGTTAACGAAGTTGGCGTTGGCCAGGCACAGTACGGATAATGTGAGCGTTGTCGTGGTTGATTTGAAGAGAGATCTATAG

Network for GWHGAAZE003226

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00481.22	PP2C	116	384	6.00E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14497	PP2C	MAPK signaling pathway - plant	map04016
K14497	PP2C	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.579
	SRR3591706	second leaf	15.436
	SRR3591707	mature leaf	24.443
	SRR3591708	Shoot apex	77.273
	SRR3591709	Stem	76.102
	SRR3591710	White floral bud	36.699
	SRR3591711	White flower	70.465
	SRR3591712	Green floral bud	18.411
	SRR3591713	Yellow flower	66.697
SRP173429	SRR8316895	Juvenile bud stage	35.068
	SRR8316896	Juvenile bud stage	45.953
	SRR8316897	Juvenile bud stage	27.978
	SRR8316894	Third green stage	6.837
	SRR8316900	Third green stage	11.380
	SRR8316901	Third green stage	24.324
	SRR8316898	Complete white stage	15.329
	SRR8316899	Complete white stage	36.379
	SRR8316903	Complete white stage	14.000
	SRR8316902	Silver flowering stage	8.595
	SRR8316904	Silver flowering stage	11.273
	SRR8316905	Silver flowering stage	8.606
	SRR8316906	Gold flowering stage	28.827
	SRR8316907	Gold flowering stage	22.088
	SRR8316908	Gold flowering stage	42.870
SRP132670	SRR6706286	Control	7.116
	SRR6706287	Light intensity 50%	7.354
	SRR6706288	Light intensity 20%	6.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.769
	CNS0095593	Slightly white alabastrum(diploid) 2	13.783
	CNS0095594	Slightly white alabastrum(diploid) 3	17.036
	CNS0095595	Whole white alabastrum(diploid) 2	13.800
	CNS0095596	Whole white alabastrum(diploid) 3	10.754
	CNS0095597	Whole white alabastrum(diploid) 4	9.589
	CNS0095598	Silvery flower (diploied) 1	20.408
	CNS0095599	Silvery flower (diploied) 2	34.841
	CNS0095600	Silvery flower (diploied) 3	29.958
	CNS0095601	Golden flower (diploid) 1	35.444
	CNS0095602	Golden flower (diploid) 2	48.686
	CNS0095603	Golden flower (diploid) 3	44.465
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.629
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.308
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.389
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.794
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.054
	CNS0095610	Silvery flower (tetraploid) 1	27.034
	CNS0095611	Silvery flower (tetraploid) 2	23.070
	CNS0095612	Silvery flower (tetraploid) 3	18.844
	CNS0095613	Golden flower (tetraploid) 1	13.161
	CNS0095614	Golden flower (tetraploid) 2	24.221
	CNS0095615	Golden flower (tetraploid) 3	10.144
CRA001975	CRR073297	Stem 1	93.400
	CRR073298	Stem 2	90.860
	CRR073299	Stem 3	103.071
	CRR073300	Leaf 1	112.708
	CRR073301	Leaf 2	174.199
	CRR073302	Leaf 3	60.323
	CRR073303	Juvenile bud 1	60.011
	CRR073304	Juvenile bud 2	36.896
	CRR073305	Juvenile bud 3	90.182
	CRR073306	Third green 1	55.965
	CRR073307	Third green 2	37.858
	CRR073308	Third green 3	31.289
	CRR073309	Second white 1	44.249
	CRR073310	Second white 2	55.921
	CRR073311	Second white 3	26.459
	CRR073312	Silver flowering 1	62.663
	CRR073313	Silver flowering 2	95.352
	CRR073314	Silver flowering 3	101.338
	CRR073315	Gold flowering 1	7.736
	CRR073316	Gold flowering 2	12.868
	CRR073317	Gold flowering 3	14.242
	CRR073318	Tawny withering 1	44.894
	CRR073319	Tawny withering 2	43.031
	CRR073320	Tawny withering 3	64.874