Gene detail

Detail information of GWHGAAZE003230

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011076786.1	0	PREDICTED: mannose-1-phosphate guanylyltransferase 1 [Sesamum indicum]
COG	YP_002728990.1	4E-56	mannose-1-phosphate guanyltransferase
Swissprot	tr\|O22287\|GMPP1_ARATH	0	Mannose-1-phosphate guanylyltransferase 1
trEMBL	tr\|C0KWD9\|C0KWD9_9ERIC	0	GDP-D-mannose pyrophosphorylase {ECO:0000313\|EMBL:ACN38266.1}
TAIR10	AT2G39770.2	0	Glucose-1-phosphate adenylyltransferase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94380518	94382052	+
GWHAAZE00000001	mRNA	94380518	94382052	+
GWHAAZE00000001	exon	94380518	94380628	+
GWHAAZE00000001	exon	94380848	94380910	+
GWHAAZE00000001	exon	94381030	94381269	+
GWHAAZE00000001	exon	94381381	94382052	+
GWHAAZE00000001	CDS	94380518	94380628	+
GWHAAZE00000001	CDS	94380848	94380910	+
GWHAAZE00000001	CDS	94381030	94381269	+
GWHAAZE00000001	CDS	94381381	94382052	+

Transcript Sequence
>GWHTAAZE003236 ATGAAGGCACTTATTCTTGTTGGAGGGTTTGGAACCCGTTTGAGGCCGTTGACCCTCAGCGTACCAAAGCCACTTGTTGATTTTGCAAACAAACCCATGATACTGCATCAGATTGAGGCTTTGAAAGCTATTGGAGTGACTGAGGTGGTTCTGGCCATCAACTATCAACCAGAGGTGATGCTCAACTTCTTGAAAGATTTTGAAGCTAAGCTCGAGATCAAGATCACATGCTCGCAAGAGACCGAGCCACTTGGCACTGCTGGTCCATTGGCTCTGGCCAGAGACAAACTAGTAGACGACTCTGGTGAGCCCTTTTTTGTTCTCAACAGTGATGTTATTAGCGATTACCCCCTCAAAGAGATGATTGCATTTCACAAATCCCATGGAGGTGAGGCTTCTATAATGGTCACGAAGGTGGACGAGCCTTCGAAATACGGTGTGGTTGTCATGGAAGAATCAACAGGGCAAGTGGAGAAGTTTGTTGAAAAACCAAAAATATTTGTGGGTAACAAAATCAACGCGGGGATTTACCTGCTCAACCCTTCTGTCCTCGATCGAATTGAACTAAGGCCCACCTCGATTGAGAAAGAGGTCTTCCCCAAAATCGCAGGAGAGAAAAAGTTGTATGCAATGGTCCTTCCTGGTTTCTGGATGGACATTGGACAGCCAAGGGATTACATTACCGGCTTGAGACTCTATCTCGAGTCCTTGAGAAAGAAATCTTCATCTAAATTGGCCAGAGGGTCCCACATAGTAGGAAATGTTCTGGTGGATGAAAGCGCCAAAATTGGGGAGGGATGTTTGATCGGGCCCGATGTTGCTGTGGGCCCTGGCTGCGTGGTTGAGTCCGGGGTTAGACTCTCCCGGTGCACTGTAATGCGTGGGGTCCGCATCAAGAAACACGCGTGCATTTCCAGCAGTATCATTGGTTGGCACTCCACTGTGGGCCAATGGGCACGAGTTGAGAACATGACCATTCTTGGAGAAGATGTTCATGTTTGTGATGAAATTTATAGCAATGGGGGTGTGGTTCTTCCCCACAAGGAAATAAAATCAAGCATTTTGAAGCCAGAAATAGTAATGTGA

Network for GWHGAAZE003230

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0142

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00483.24	NTP_transferase	2	229	7.10E-53
PF00132.25	Hexapep	260	295	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00966	GMPP	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0016779	molecular_function	nucleotidyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	81.988
	SRR3591706	second leaf	37.485
	SRR3591707	mature leaf	23.378
	SRR3591708	Shoot apex	47.317
	SRR3591709	Stem	76.156
	SRR3591710	White floral bud	127.444
	SRR3591711	White flower	89.990
	SRR3591712	Green floral bud	83.763
	SRR3591713	Yellow flower	103.642
SRP173429	SRR8316895	Juvenile bud stage	36.947
	SRR8316896	Juvenile bud stage	50.774
	SRR8316897	Juvenile bud stage	21.380
	SRR8316894	Third green stage	21.899
	SRR8316900	Third green stage	68.224
	SRR8316901	Third green stage	68.212
	SRR8316898	Complete white stage	65.856
	SRR8316899	Complete white stage	158.955
	SRR8316903	Complete white stage	97.777
	SRR8316902	Silver flowering stage	36.247
	SRR8316904	Silver flowering stage	53.037
	SRR8316905	Silver flowering stage	32.290
	SRR8316906	Gold flowering stage	91.550
	SRR8316907	Gold flowering stage	79.359
	SRR8316908	Gold flowering stage	66.530
SRP132670	SRR6706286	Control	106.386
	SRR6706287	Light intensity 50%	110.228
	SRR6706288	Light intensity 20%	116.225
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.972
	CNS0095593	Slightly white alabastrum(diploid) 2	50.589
	CNS0095594	Slightly white alabastrum(diploid) 3	43.011
	CNS0095595	Whole white alabastrum(diploid) 2	38.684
	CNS0095596	Whole white alabastrum(diploid) 3	38.423
	CNS0095597	Whole white alabastrum(diploid) 4	52.843
	CNS0095598	Silvery flower (diploied) 1	51.740
	CNS0095599	Silvery flower (diploied) 2	44.697
	CNS0095600	Silvery flower (diploied) 3	86.994
	CNS0095601	Golden flower (diploid) 1	37.207
	CNS0095602	Golden flower (diploid) 2	81.040
	CNS0095603	Golden flower (diploid) 3	72.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	61.480
	CNS0095605	Slightly white alabastrum(tetraploid) 2	56.182
	CNS0095606	Slightly white alabastrum(tetraploid) 3	113.037
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.942
	CNS0095608	Whole white alabastrum(tetraploid) 2	48.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	73.583
	CNS0095610	Silvery flower (tetraploid) 1	71.040
	CNS0095611	Silvery flower (tetraploid) 2	70.545
	CNS0095612	Silvery flower (tetraploid) 3	73.075
	CNS0095613	Golden flower (tetraploid) 1	64.227
	CNS0095614	Golden flower (tetraploid) 2	65.814
	CNS0095615	Golden flower (tetraploid) 3	72.374
CRA001975	CRR073297	Stem 1	67.348
	CRR073298	Stem 2	61.556
	CRR073299	Stem 3	83.118
	CRR073300	Leaf 1	92.969
	CRR073301	Leaf 2	77.360
	CRR073302	Leaf 3	94.594
	CRR073303	Juvenile bud 1	118.444
	CRR073304	Juvenile bud 2	181.208
	CRR073305	Juvenile bud 3	154.677
	CRR073306	Third green 1	147.383
	CRR073307	Third green 2	149.065
	CRR073308	Third green 3	131.098
	CRR073309	Second white 1	83.718
	CRR073310	Second white 2	58.412
	CRR073311	Second white 3	53.318
	CRR073312	Silver flowering 1	71.820
	CRR073313	Silver flowering 2	91.636
	CRR073314	Silver flowering 3	65.167
	CRR073315	Gold flowering 1	30.408
	CRR073316	Gold flowering 2	39.462
	CRR073317	Gold flowering 3	50.744
	CRR073318	Tawny withering 1	88.523
	CRR073319	Tawny withering 2	58.977
	CRR073320	Tawny withering 3	105.249