Gene detail

Detail information of GWHGAAZE003268

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001234585.1	0	chloroplast sedoheptulose-1,7-bisphosphatase [Solanum lycopersicum]
COG	YP_901446.1	1E-53	fructose-1,6-bisphosphatase
Swissprot	tr\|O20252\|S17P_SPIOL	0	Sedoheptulose-1,7-bisphosphatase, chloroplastic (Precursor)
trEMBL	tr\|C5IU71\|C5IU71_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g052600.2.1}
TAIR10	AT3G55800.1	0	sedoheptulose-bisphosphatase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	94990724	94993665	+
GWHAAZE00000001	mRNA	94990724	94993665	+
GWHAAZE00000001	exon	94990724	94990855	+
GWHAAZE00000001	exon	94991509	94991631	+
GWHAAZE00000001	exon	94991750	94991935	+
GWHAAZE00000001	exon	94992144	94992225	+
GWHAAZE00000001	exon	94992325	94992546	+
GWHAAZE00000001	exon	94992714	94992814	+
GWHAAZE00000001	exon	94992953	94993024	+
GWHAAZE00000001	exon	94993384	94993665	+
GWHAAZE00000001	CDS	94990724	94990855	+
GWHAAZE00000001	CDS	94991509	94991631	+
GWHAAZE00000001	CDS	94991750	94991935	+
GWHAAZE00000001	CDS	94992144	94992225	+
GWHAAZE00000001	CDS	94992325	94992546	+
GWHAAZE00000001	CDS	94992714	94992814	+
GWHAAZE00000001	CDS	94992953	94993024	+
GWHAAZE00000001	CDS	94993384	94993665	+

Transcript Sequence
>GWHTAAZE003274 ATGCAAGTTACAAGAATGGAGACAGGGATCACATGCTATGGACGTGGGGCTCTTCTCCCAAGTGTTGCTTCTCAACATTCAAGCGCTGCACTAGCTTCTCCCCGAACTATTTCTCCATCTTTTAACGCCAGGAGTCTCAAATCAAGTTCTTTATTTGGGGAGTCTTTGAGGATAATGCCCAGATCATCACTCAAGGTTTCAAAGACAAAGAACTCGAATTCCCTTGTCACCAAATGCGAGATTGGTGATAGCCTGGAAGAGTTCCTTACAAAAGCAACTCCAGACAAGGGACTGATAAGATTGATGATGTGCATGGGAGAAGCAATTAGGACCATTGCTTTTAAAGTTAGAACTGCTGCTTGTGGAGGAACTGCTTGTGTCAATACTTTTGGTGATGAGCAACTTGCTGTTGATATGCTTGCTGATAAACTACTATTTGAGGCCTTGACTTACTCACACTTCTGCAAATATGCTTGCTCTGAAGAAGTCCCTGAGCTCCAAGATATGGGAGGCCCAGTGGAAGGAGGATTTAGTGTTGCATTTGATCCACTCGATGGTTCCAGTATTGTCGACACAAATTTCACAGTGGGCACCATCTTTGGGGTGTGGCCAGGGGACAAGCTAACTGGGGTAACCGGTGCAGACCAAGTTGCTGCAGCCATGGGGATTTATGGACCTCGAACCACATATGTCCTTGCTCTTAAAGATAGTCCTGGGTGCCACGAATTTCTCCTTCTTGACGAAGGAAAATGGCAACATGTCAAAGACACTACAGAAATCGGAGAAGGAAAGATGTTTTCCCCTGGAAATCTGAGAGCCACCTTTGACAACCCCAACTATGAAAAGCTCATCAACTACTACGTAAAAGAGAAGTACACGCTGCGATACACCGGAGGAATGGTTCCTGATGTTAACCAGATCATTGTGAAAGAGAAGGGTGTGTTCACAAATGTCATATCACCAACTACCAAAGCCAAGCTGAGACTATTGTTCGAGGTGGCTCCTTTAGGATTCATGATTGAGAAAGCCGGAGGGTACAGTAGCGATGGCAAACAGTCGGTGCTAGACAAGGTTATCGTTAATCTTGACGATAGAACTCAAGTAGCTTATGGATCCAAGAATGAGATTATTCGATTCGAAGAAACTCTCTACGGATCCTCCAGGCTCAAGGCTGCTGAGCCTGTTGGTGCTGCTGCCTAA

Network for GWHGAAZE003268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00316.21	FBPase	76	255	3.00E-56
PF18913.1	FBPase_C	262	382	8.50E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01100	E3.1.3.37	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0042578	molecular_function	phosphoric ester hydrolase activity
GO:0016791	molecular_function	phosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	157.434
	SRR3591706	second leaf	949.754
	SRR3591707	mature leaf	1373.040
	SRR3591708	Shoot apex	324.319
	SRR3591709	Stem	130.397
	SRR3591710	White floral bud	16.105
	SRR3591711	White flower	31.722
	SRR3591712	Green floral bud	20.262
	SRR3591713	Yellow flower	5.699
SRP173429	SRR8316895	Juvenile bud stage	88.559
	SRR8316896	Juvenile bud stage	84.615
	SRR8316897	Juvenile bud stage	58.360
	SRR8316894	Third green stage	33.202
	SRR8316900	Third green stage	62.425
	SRR8316901	Third green stage	50.030
	SRR8316898	Complete white stage	3.421
	SRR8316899	Complete white stage	16.561
	SRR8316903	Complete white stage	9.732
	SRR8316902	Silver flowering stage	0.966
	SRR8316904	Silver flowering stage	1.069
	SRR8316905	Silver flowering stage	0.736
	SRR8316906	Gold flowering stage	1.697
	SRR8316907	Gold flowering stage	1.233
	SRR8316908	Gold flowering stage	1.508
SRP132670	SRR6706286	Control	48.430
	SRR6706287	Light intensity 50%	33.098
	SRR6706288	Light intensity 20%	33.427
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.363
	CNS0095593	Slightly white alabastrum(diploid) 2	20.221
	CNS0095594	Slightly white alabastrum(diploid) 3	30.079
	CNS0095595	Whole white alabastrum(diploid) 2	22.707
	CNS0095596	Whole white alabastrum(diploid) 3	20.214
	CNS0095597	Whole white alabastrum(diploid) 4	14.383
	CNS0095598	Silvery flower (diploied) 1	107.457
	CNS0095599	Silvery flower (diploied) 2	97.480
	CNS0095600	Silvery flower (diploied) 3	20.262
	CNS0095601	Golden flower (diploid) 1	89.837
	CNS0095602	Golden flower (diploid) 2	55.638
	CNS0095603	Golden flower (diploid) 3	52.386
	CNS0095604	Slightly white alabastrum(tetraploid) 1	31.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	39.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.865
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.469
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.285
	CNS0095610	Silvery flower (tetraploid) 1	2.908
	CNS0095611	Silvery flower (tetraploid) 2	18.565
	CNS0095612	Silvery flower (tetraploid) 3	3.817
	CNS0095613	Golden flower (tetraploid) 1	2.134
	CNS0095614	Golden flower (tetraploid) 2	4.471
	CNS0095615	Golden flower (tetraploid) 3	1.837
CRA001975	CRR073297	Stem 1	141.128
	CRR073298	Stem 2	106.482
	CRR073299	Stem 3	152.816
	CRR073300	Leaf 1	13.105
	CRR073301	Leaf 2	18.932
	CRR073302	Leaf 3	16.236
	CRR073303	Juvenile bud 1	14.776
	CRR073304	Juvenile bud 2	8.085
	CRR073305	Juvenile bud 3	16.484
	CRR073306	Third green 1	1.384
	CRR073307	Third green 2	0.353
	CRR073308	Third green 3	2.465
	CRR073309	Second white 1	0.574
	CRR073310	Second white 2	0.293
	CRR073311	Second white 3	0.501
	CRR073312	Silver flowering 1	0.032
	CRR073313	Silver flowering 2	0.305
	CRR073314	Silver flowering 3	0.270
	CRR073315	Gold flowering 1	983.237
	CRR073316	Gold flowering 2	1179.044
	CRR073317	Gold flowering 3	963.441
	CRR073318	Tawny withering 1	77.533
	CRR073319	Tawny withering 2	80.054
	CRR073320	Tawny withering 3	71.862