Detail information of GWHGAAZE003283


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002268645.10PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
COGNP_280019.13E-29acidic ribosomal protein P0
Swissprottr|P50346|RLA0_SOYBN1E-18060S acidic ribosomal protein P0
trEMBLtr|F6HC03|F6HC03_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB49883.1}
TAIR10AT2G40010.13E-131Ribosomal protein L10 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9525046295253354-
GWHAAZE00000001mRNA9525046295253354-
GWHAAZE00000001exon9525293895253354-
GWHAAZE00000001exon9525275095252818-
GWHAAZE00000001exon9525134895251446-
GWHAAZE00000001exon9525087495251266-
GWHAAZE00000001exon9525046295250608-
GWHAAZE00000001five_prime_UTR9525319695253354-
GWHAAZE00000001CDS9525293895253195-
GWHAAZE00000001CDS9525275095252818-
GWHAAZE00000001CDS9525134895251446-
GWHAAZE00000001CDS9525087495251266-
GWHAAZE00000001CDS9525046295250608-
Transcript Sequence

Network for GWHGAAZE003283

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00466.21Ribosomal_L1071083.90E-19
PF17777.2RL10P_insert1141831.60E-20
PF00428.20Ribosomal_60s2343206.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02941RP-LP0, RPLP0 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254biological_processribosome biogenesis

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf354.659
SRR3591706second leaf192.159
SRR3591707mature leaf331.928
SRR3591708Shoot apex277.856
SRR3591709Stem460.000
SRR3591710White floral bud171.785
SRR3591711White flower217.055
SRR3591712Green floral bud165.477
SRR3591713Yellow flower158.122
SRP173429 SRR8316895Juvenile bud stage 102.297
SRR8316896Juvenile bud stage 124.091
SRR8316897Juvenile bud stage 55.621
SRR8316894Third green stage 44.245
SRR8316900Third green stage 122.016
SRR8316901Third green stage 126.090
SRR8316898Complete white stage 68.220
SRR8316899Complete white stage 248.687
SRR8316903Complete white stage 112.358
SRR8316902Silver flowering stage54.821
SRR8316904Silver flowering stage64.145
SRR8316905Silver flowering stage36.909
SRR8316906Gold flowering stage 101.584
SRR8316907Gold flowering stage 100.449
SRR8316908Gold flowering stage 111.179
SRP132670SRR6706286Control132.845
SRR6706287Light intensity 50%118.457
SRR6706288Light intensity 20%123.521
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1120.333
CNS0095593Slightly white alabastrum(diploid) 2153.404
CNS0095594Slightly white alabastrum(diploid) 3141.055
CNS0095595Whole white alabastrum(diploid) 2131.498
CNS0095596Whole white alabastrum(diploid) 398.974
CNS0095597Whole white alabastrum(diploid) 4113.607
CNS0095598Silvery flower (diploied) 1236.063
CNS0095599Silvery flower (diploied) 2225.846
CNS0095600Silvery flower (diploied) 3215.767
CNS0095601Golden flower (diploid) 1256.829
CNS0095602Golden flower (diploid) 2271.403
CNS0095603Golden flower (diploid) 3265.038
CNS0095604Slightly white alabastrum(tetraploid) 1129.077
CNS0095605Slightly white alabastrum(tetraploid) 2117.962
CNS0095606Slightly white alabastrum(tetraploid) 3236.115
CNS0095607Whole white alabastrum(tetraploid) 1100.214
CNS0095608Whole white alabastrum(tetraploid) 278.886
CNS0095609Whole white alabastrum(tetraploid) 3126.345
CNS0095610Silvery flower (tetraploid) 1140.532
CNS0095611Silvery flower (tetraploid) 2170.955
CNS0095612Silvery flower (tetraploid) 3146.907
CNS0095613Golden flower (tetraploid) 192.916
CNS0095614Golden flower (tetraploid) 2131.359
CNS0095615Golden flower (tetraploid) 3134.861
CRA001975CRR073297Stem 1183.602
CRR073298Stem 2176.518
CRR073299Stem 3252.702
CRR073300Leaf 1184.612
CRR073301Leaf 2196.961
CRR073302Leaf 3211.250
CRR073303Juvenile bud 1217.022
CRR073304Juvenile bud 2182.114
CRR073305Juvenile bud 3274.607
CRR073306Third green 1182.025
CRR073307Third green 2197.365
CRR073308Third green 3174.317
CRR073309Second white 1187.991
CRR073310Second white 2124.177
CRR073311Second white 391.680
CRR073312Silver flowering 1148.446
CRR073313Silver flowering 2212.460
CRR073314Silver flowering 3137.597
CRR073315Gold flowering 1426.216
CRR073316Gold flowering 2454.558
CRR073317Gold flowering 3490.046
CRR073318Tawny withering 1575.940
CRR073319Tawny withering 2500.212
CRR073320Tawny withering 3652.788