Gene detail

Detail information of GWHGAAZE003284

Functional Annotation

Database	Orthologs	Annotation
Nr	BAH47612.1	auxin influx carrier protein [Zinnia violacea]
Swissprot	tr\|Q9FEL7\|LAX2_MEDTR	Auxin transporter-like protein 2
trEMBL	tr\|C0SU68\|C0SU68_ZINVI	Auxin influx carrier protein {ECO:0000313\|EMBL:BAH47612.1}
TAIR10	AT5G01240.1	like AUXIN RESISTANT 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95274497	95279635	+
GWHAAZE00000001	mRNA	95274497	95279635	+
GWHAAZE00000001	exon	95274497	95274920	+
GWHAAZE00000001	exon	95275127	95275341	+
GWHAAZE00000001	exon	95275430	95275615	+
GWHAAZE00000001	exon	95275768	95275880	+
GWHAAZE00000001	exon	95275979	95276162	+
GWHAAZE00000001	exon	95276693	95276790	+
GWHAAZE00000001	exon	95277306	95277513	+
GWHAAZE00000001	exon	95277936	95278193	+
GWHAAZE00000001	exon	95279432	95279635	+
GWHAAZE00000001	five_prime_UTR	95274497	95274920	+
GWHAAZE00000001	five_prime_UTR	95275127	95275167	+
GWHAAZE00000001	CDS	95275168	95275341	+
GWHAAZE00000001	CDS	95275430	95275615	+
GWHAAZE00000001	CDS	95275768	95275880	+
GWHAAZE00000001	CDS	95275979	95276162	+
GWHAAZE00000001	CDS	95276693	95276790	+
GWHAAZE00000001	CDS	95277306	95277513	+
GWHAAZE00000001	CDS	95277936	95278193	+
GWHAAZE00000001	CDS	95279432	95279635	+

Transcript Sequence
>GWHTAAZE003290 TCACGCACACTAGTTGTGGTACCTTTTATCGTCTTCAGATCTCTCGATTTGGGACTCTGTTTTTAATAGAGATTATTAACCTATTAGCATGATTTGTGTGTTACATAAACAAACATTCTATGCGGGCATTTCATTGGCAATAAGCTGAATCTCTCTTTTTTCTCAACGCTTAAAAGCAGCATTTATTAAGGCAAATTTGGGTTAAGTGTATGAGAGAGAACAAATAGTAAGATTTAGTGAAAGAGAGTGAAAAAACAAAATATTTGGGTAGTTATTCTTAAATGTAATTGCAATTTTTGGGTAGTTATTATTAAATGTAATTGCATTTATGTTACTGCCAATATTGGGAAACAACTATCCACAGAATTCGTAATCCTTCGCTGGAAAGCTGTATGCATTAACCAGTGCCACTTCCTCAAATAAGTTTCAGATCAAAGGGAAGTGAAGAAAAGGGAGGAAATTAATATGGTGCCTAAAAAGCAAGCTGAAGTGGCCATGGTGTCTGATGGAATGAACGAGAGTGAACAAGAGGAGAGGGAGGGTGGTGAAAGGGCAGATCAGTCAATTTCCGGCTTCAAAAGCTTTCTGTGGCATGGTGGTTCTGTTTATGATGCCTGGTTCAGCTGTGCTTCAAATCAGGTGGCACAGGTTCTTTTAACTTTACCATACTCATTCTCTCAACTGGGAATGCTTTCCGGAATACTACTACAGGTTTTTTATGGGATACTTGGGAGCTGGACTGCTTATCTTATTAGTGTCCTCTATGTTGAGTACAGAACCAGAAAGGAGAAAGAAAATGTTAGCTTCAAGAACCATGTTATACAGTGGTTTGAGGTGCTGGATGGGTTATTGGGTCCCAAATGGAAAGCTGTGGGATTGGCCTTCAATTGCACCTTTCTTCTCTTTGGCTCTGTTATTCAGCTAATTGCTTGTGCAAGCAATATATACTACATAAATGACCGATTAGACAAGAGGACATGGACATACATATTCGGGGCTTGTTGTGCTACAACTGTGTTCATACCTTCATTTCACAACTATAGGATTTGGTCCTTTCTAGGGCTTGGGATGACCACCTTCACCGCCTGGTACTTGACCATCGCAGCCTTTGTTCACGGCCAGGTTGAGGGAGTGAGTCATTCGGGTCCGACAAAAATGGTACTCTATTTTACAGGGGCCACCAACATCCTCTACACTTTCGGCGGCCACGCAGTTACTGTGGAAATAATGCATGCAATGTGGAAGCCTCAGAAATTCAAGTACATATATTTGTTTGCAACCTTGTATGTATTCACCCTTACAATTCCATCAGCTTCTGCAATGTACTGGGCCTTCGGTGACCAACTCCTCAACCACTCAAATGCCTTCTCCCTCCTCCCTCGTACTCGCTTCCGTGATGCAGCTGTTATCCTAATGCTCATCCACCAGTTTATAACATTTGGGTTTGCGTGTACGCCATTGTACTTTGTGTGGGAGAAAGTGGTGGGTATGCACGACACGAAGAGCATATGTCTAAGGGCACTAACCAGGCTACCGGTGGTGATACCGATATGGTTCTTGGCCATTATTTTTCCCTTCTTTGGGCCTATCAACTCAGCTGTGGGGGCTCTCTTAGTTAGCTTCACTGTCTACATCATCCCTGCTCTTGCCCATATGCTAACTTACAGAAAGGCCTCGGCTCGGCAGAATGCGGCAGAGAAACCTCCATTCTTTCTACCGAGCTGGACAGGGATGTATGCAGTGAACATATTTGTGGTGGGGTGGGTGTTGGTGGTAGGTTTTGGATTTGGAGGGTGGGCTAGCATGACCAATTTCATCAAGCAGGTTGACACCTTTGGACTCTTTGCTAAGTGCTACCAATGCAAGCCTCCACCACCACAGCATCATTGA

Network for GWHGAAZE003284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0016

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	43	436	7.30E-79

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13946	AUX1, LAX	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	85.390
	SRR3591706	second leaf	7.771
	SRR3591707	mature leaf	4.853
	SRR3591708	Shoot apex	19.443
	SRR3591709	Stem	194.077
	SRR3591710	White floral bud	14.496
	SRR3591711	White flower	9.896
	SRR3591712	Green floral bud	18.284
	SRR3591713	Yellow flower	5.790
SRP173429	SRR8316895	Juvenile bud stage	22.762
	SRR8316896	Juvenile bud stage	13.884
	SRR8316897	Juvenile bud stage	4.427
	SRR8316894	Third green stage	6.806
	SRR8316900	Third green stage	15.197
	SRR8316901	Third green stage	13.958
	SRR8316898	Complete white stage	27.479
	SRR8316899	Complete white stage	29.595
	SRR8316903	Complete white stage	48.066
	SRR8316902	Silver flowering stage	15.500
	SRR8316904	Silver flowering stage	25.332
	SRR8316905	Silver flowering stage	11.517
	SRR8316906	Gold flowering stage	34.005
	SRR8316907	Gold flowering stage	32.253
	SRR8316908	Gold flowering stage	19.368
SRP132670	SRR6706286	Control	13.899
	SRR6706287	Light intensity 50%	15.001
	SRR6706288	Light intensity 20%	12.263
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.710
	CNS0095593	Slightly white alabastrum(diploid) 2	15.526
	CNS0095594	Slightly white alabastrum(diploid) 3	9.671
	CNS0095595	Whole white alabastrum(diploid) 2	8.134
	CNS0095596	Whole white alabastrum(diploid) 3	6.240
	CNS0095597	Whole white alabastrum(diploid) 4	5.335
	CNS0095598	Silvery flower (diploied) 1	22.813
	CNS0095599	Silvery flower (diploied) 2	13.137
	CNS0095600	Silvery flower (diploied) 3	25.230
	CNS0095601	Golden flower (diploid) 1	17.921
	CNS0095602	Golden flower (diploid) 2	31.559
	CNS0095603	Golden flower (diploid) 3	28.528
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.879
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.619
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.058
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.568
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.402
	CNS0095610	Silvery flower (tetraploid) 1	6.324
	CNS0095611	Silvery flower (tetraploid) 2	13.081
	CNS0095612	Silvery flower (tetraploid) 3	63.810
	CNS0095613	Golden flower (tetraploid) 1	4.668
	CNS0095614	Golden flower (tetraploid) 2	2.757
	CNS0095615	Golden flower (tetraploid) 3	23.112
CRA001975	CRR073297	Stem 1	22.713
	CRR073298	Stem 2	19.048
	CRR073299	Stem 3	31.048
	CRR073300	Leaf 1	13.974
	CRR073301	Leaf 2	14.542
	CRR073302	Leaf 3	16.387
	CRR073303	Juvenile bud 1	14.004
	CRR073304	Juvenile bud 2	6.990
	CRR073305	Juvenile bud 3	20.170
	CRR073306	Third green 1	99.475
	CRR073307	Third green 2	102.660
	CRR073308	Third green 3	94.453
	CRR073309	Second white 1	123.981
	CRR073310	Second white 2	86.270
	CRR073311	Second white 3	87.277
	CRR073312	Silver flowering 1	100.580
	CRR073313	Silver flowering 2	114.049
	CRR073314	Silver flowering 3	87.628
	CRR073315	Gold flowering 1	4.290
	CRR073316	Gold flowering 2	7.189
	CRR073317	Gold flowering 3	8.379
	CRR073318	Tawny withering 1	56.938
	CRR073319	Tawny withering 2	51.302
	CRR073320	Tawny withering 3	69.901