Gene detail

Detail information of GWHGAAZE003291

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006338854.1	0	PREDICTED: cytochrome P450 90A1-like [Solanum tuberosum]
COG	YP_001519436.1	2E-54	cytochrome P450 family protein
Swissprot	tr\|Q42569\|C90A1_ARATH	0	Cytochrome P450 90A1
trEMBL	tr\|M1C775\|M1C775_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400061190}
TAIR10	AT5G05690.1	0	Cytochrome P450 superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95462224	95468144	+
GWHAAZE00000001	mRNA	95462224	95468144	+
GWHAAZE00000001	exon	95462224	95462757	+
GWHAAZE00000001	exon	95463282	95463431	+
GWHAAZE00000001	exon	95463649	95463909	+
GWHAAZE00000001	exon	95465368	95465472	+
GWHAAZE00000001	exon	95466525	95466611	+
GWHAAZE00000001	exon	95466723	95466801	+
GWHAAZE00000001	exon	95467076	95467182	+
GWHAAZE00000001	exon	95467341	95467471	+
GWHAAZE00000001	exon	95467583	95467677	+
GWHAAZE00000001	exon	95468044	95468144	+
GWHAAZE00000001	CDS	95462224	95462757	+
GWHAAZE00000001	CDS	95463282	95463431	+
GWHAAZE00000001	CDS	95463649	95463909	+
GWHAAZE00000001	CDS	95465368	95465472	+
GWHAAZE00000001	CDS	95466525	95466611	+
GWHAAZE00000001	CDS	95466723	95466801	+
GWHAAZE00000001	CDS	95467076	95467182	+
GWHAAZE00000001	CDS	95467341	95467471	+
GWHAAZE00000001	CDS	95467583	95467677	+
GWHAAZE00000001	CDS	95468044	95468045	+
GWHAAZE00000001	three_prime_UTR	95468046	95468144	+

Transcript Sequence
>GWHTAAZE003297 ATGGATTCCATGATGGCTGTCTTCCTCTCTCTCCTCCTTTCAACCTCCCTGTCCTTCCTCATCTACTTCCTCCACCGCACAAACCACTTTACCCGCCGTAAGCTCCGTCTACCGCCGGGGAACCTTGGCCTTCCCCTAGTCGGCGAGACCCTCCAGCTAATCTCTGCCTACAAGACCGAAAACCCCGAACCCTTCATCGATGACCGGGTGGCTCGATACGGCACTGTCTTCACCACCCACGTGTTCGGTGAACCGACGGTTTTTTCCGCCGATCCGGACATCAACCGGTTCATCTTACAGAACGAGGGGAAGCTTTTCGAGTCTAGCTACCCGGGTTCCATCTCCAACTTATTGGGAAGGCATTCTTTGCTCCTAATGAGGGGTACTCTTCACAAGAGAATGCATTCTCTAACTATGAGCTTTGCAAACTCTTCCATCATTAGAGACCATTTGTTGGTTGATATAGACCGGTTGGTCCGACTCAACTTGGAGTCATGGACCGGTCGTGTCCTTCTCATGGAGGAGGCTAAGAAGATTACCTTCGTATTAACAGTAAAGCAGCTGATGAGCTTTGATCCATGTGGGTGGACAGAGAATCTCATGAAAGAGTACATGCTTGTAATTGAGGGCTTTTTCTCCATTCCTCTCCCTCTTTTCTCCATCACCTACCGCAGAGCCATTCAGGCGAGAAGAAAGGTGGCAGAAGCGTTGATGTTGGTAGTGAGGGAAAGGAGGAGAGAGAGTGAGAGAGGAGAGAGAAAGAATGACATGCTGGGGGCACTACTGGATGGTGACGGTGACGGCGGTGGCGGTGGATTCTCGAACGAGGAAATAGTGGACTTTTTGGTGGCTCTGCTAGTTGCGGGCTATGAAACCACCTCTACCATAATGACACTCGCCGTTAAGTTCCTCACGGAGACACCTCTCGCTTTGGCTCAGCTCAAGTGCGGTGGTGAATCTGTGAACGTAGACCGTGAATTGAGTTGGAAGCTATGGCTCGTACATGCCTTTGGGAATCGTGTGGTGATGATTTCGAGGAATCATCGGGCGGAAGAGCACGACGAGATCAGACGAAAGAAAGGTGAAACAGAGGGCCTAGTGTGGGAAGACTACAAGTCTATGCCTTTCACCCAATGGGTTGTTAATGAAACTCTGCGAGTTGCTAACATAATTAGTGGAGTTTTTAGGCGAGCGATGACTGATGTCAATATTAAAGGTTACACAATTCCGAAAGGGTGGAAAGTCTTTGCTTCACTACGGGCTGTTCACCTAGATCAGGACCACTTCAAAGATGCTCGCACTTTCAATCCATGGCGGTGGCAGAACAATTCAGCAGCAACAAGCTCGGTGAATGTGTTCACACCATTTGGTGGTGGACCAAGGCGGTGTCCAGGATCCGAGCTTGCCAGAGTGGAACTCTCCGTTTTCCTTCACCATCTAGTCACTCGTTTCAGCTGGGTTCCTGCAGAAAACGATAAGCTGGTTTTCTTTCCAACCACGCGCACACAGAAGAGGTATCCAATCATCGTGGAACAGCGAGTCAACCCATGAGCCTTGGGGAGCATGTTCCTGAGAGCTGGACCATTGCTTTTCTTAAGTGGAGGGTCCATCACTCCATCTTGTTATATCATCCTCGAGCCCCTCAACTGA

Network for GWHGAAZE003291

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	211	314	1.40E-10
PF00067.23	p450	353	494	3.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09588	CYP90A1, CPD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Brassinosteroid biosynthesis	map00905

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.816
	SRR3591706	second leaf	27.519
	SRR3591707	mature leaf	17.829
	SRR3591708	Shoot apex	19.975
	SRR3591709	Stem	25.365
	SRR3591710	White floral bud	39.629
	SRR3591711	White flower	32.179
	SRR3591712	Green floral bud	37.497
	SRR3591713	Yellow flower	27.539
SRP173429	SRR8316895	Juvenile bud stage	15.989
	SRR8316896	Juvenile bud stage	27.017
	SRR8316897	Juvenile bud stage	16.323
	SRR8316894	Third green stage	19.522
	SRR8316900	Third green stage	85.694
	SRR8316901	Third green stage	80.870
	SRR8316898	Complete white stage	36.225
	SRR8316899	Complete white stage	98.393
	SRR8316903	Complete white stage	55.707
	SRR8316902	Silver flowering stage	22.271
	SRR8316904	Silver flowering stage	27.451
	SRR8316905	Silver flowering stage	17.437
	SRR8316906	Gold flowering stage	40.381
	SRR8316907	Gold flowering stage	33.217
	SRR8316908	Gold flowering stage	33.107
SRP132670	SRR6706286	Control	84.109
	SRR6706287	Light intensity 50%	76.032
	SRR6706288	Light intensity 20%	73.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.163
	CNS0095593	Slightly white alabastrum(diploid) 2	45.595
	CNS0095594	Slightly white alabastrum(diploid) 3	42.151
	CNS0095595	Whole white alabastrum(diploid) 2	33.571
	CNS0095596	Whole white alabastrum(diploid) 3	33.462
	CNS0095597	Whole white alabastrum(diploid) 4	35.296
	CNS0095598	Silvery flower (diploied) 1	57.999
	CNS0095599	Silvery flower (diploied) 2	68.833
	CNS0095600	Silvery flower (diploied) 3	194.693
	CNS0095601	Golden flower (diploid) 1	50.869
	CNS0095602	Golden flower (diploid) 2	167.793
	CNS0095603	Golden flower (diploid) 3	164.960
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.949
	CNS0095605	Slightly white alabastrum(tetraploid) 2	43.829
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.407
	CNS0095607	Whole white alabastrum(tetraploid) 1	33.626
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.408
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.783
	CNS0095610	Silvery flower (tetraploid) 1	102.159
	CNS0095611	Silvery flower (tetraploid) 2	215.032
	CNS0095612	Silvery flower (tetraploid) 3	54.474
	CNS0095613	Golden flower (tetraploid) 1	31.358
	CNS0095614	Golden flower (tetraploid) 2	57.866
	CNS0095615	Golden flower (tetraploid) 3	28.712
CRA001975	CRR073297	Stem 1	26.241
	CRR073298	Stem 2	35.749
	CRR073299	Stem 3	20.476
	CRR073300	Leaf 1	76.568
	CRR073301	Leaf 2	79.262
	CRR073302	Leaf 3	66.485
	CRR073303	Juvenile bud 1	64.544
	CRR073304	Juvenile bud 2	34.719
	CRR073305	Juvenile bud 3	82.963
	CRR073306	Third green 1	18.041
	CRR073307	Third green 2	16.864
	CRR073308	Third green 3	18.799
	CRR073309	Second white 1	11.758
	CRR073310	Second white 2	6.159
	CRR073311	Second white 3	6.154
	CRR073312	Silver flowering 1	5.327
	CRR073313	Silver flowering 2	10.608
	CRR073314	Silver flowering 3	10.103
	CRR073315	Gold flowering 1	18.460
	CRR073316	Gold flowering 2	27.848
	CRR073317	Gold flowering 3	22.233
	CRR073318	Tawny withering 1	13.145
	CRR073319	Tawny withering 2	10.729
	CRR073320	Tawny withering 3	8.903