Gene detail

Detail information of GWHGAAZE003298

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002269949.1	PREDICTED: phosphoinositide phospholipase C 2 [Vitis vinifera]
Swissprot	tr\|Q39033\|PLCD2_ARATH	Phosphoinositide phospholipase C 2
trEMBL	tr\|A5C0R5\|A5C0R5_VITVI	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}
TAIR10	AT3G08510.2	phospholipase C 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95561637	95574278	+
GWHAAZE00000001	mRNA	95561637	95574278	+
GWHAAZE00000001	exon	95561637	95561954	+
GWHAAZE00000001	exon	95562474	95562670	+
GWHAAZE00000001	exon	95562952	95563087	+
GWHAAZE00000001	exon	95563164	95563397	+
GWHAAZE00000001	exon	95563556	95563719	+
GWHAAZE00000001	exon	95571159	95571276	+
GWHAAZE00000001	exon	95572660	95572803	+
GWHAAZE00000001	exon	95572972	95573058	+
GWHAAZE00000001	exon	95573985	95574278	+
GWHAAZE00000001	CDS	95561637	95561954	+
GWHAAZE00000001	CDS	95562474	95562670	+
GWHAAZE00000001	CDS	95562952	95563087	+
GWHAAZE00000001	CDS	95563164	95563397	+
GWHAAZE00000001	CDS	95563556	95563719	+
GWHAAZE00000001	CDS	95571159	95571276	+
GWHAAZE00000001	CDS	95572660	95572803	+
GWHAAZE00000001	CDS	95572972	95573058	+
GWHAAZE00000001	CDS	95573985	95574278	+

Transcript Sequence
>GWHTAAZE003304 ATGTCGAAACAGACGTACAGAGTCTGCTTCTGCTTCCAGCGACGGTTCAAGCTCGCCGCCACAGAAGCTCCGGCGGATATCAAGAACTTTTTCGATCAGTACTCCGAGAACGGAGTTATGTCCGTTGAGCATCTCCATAGGTTCTTAGTCGAGGTCCAGAAAGAAGATAAGGCCACCGTTGATGACGCTCAGGGAATTTTGAATAGCCTCAACGAGTTTAAGCATCTCAATATCTTCCACCGCAGGGGACTCACTCTCGAGGCTTTTTTCAAGTATTTGTTCGGTGATATCAATCCTCCTCTCTGTCCTTCCCCTGGGGTTCAGGATGATATGAGTGCTCCGTTGTCTCATTATTTCATTTACACTGGCCACAATTCATACCTAACTGGTAATCAATTAAGTAGCGACTGCAGCGATGTCCCCATCGTAAAAGCACTGCAGAGAGGCGTACGAGTTATCGAATTGGATATATGGCCTAACTCATCAAAAGATAACGTGGATGTTCTTCATGGAAGAACACTTACCACTCCTGTTCCACTCATTAAATGCTTGAGGTCTGTCAAGGAGCATGCCTTTGCTGCATCTGAGTATCCTGTTGTGATAACTCTAGAAGACCACCTTACTCCAGATCTTCAGGCTAAAGTGGCTGACATGGTCACTCATACCTTTGGAGACATGCTGTTTTGTCCTGGCTCAGAATGCTTGAAGGAGTTCCCTTCCCCAGAATCACTGAAAAAGCGGATTATTATATCGACTAAGCCACCCAAAGAATACCTCAAGACCAAAGAAGTTAAGGAAAAAGAGATCAATGCAAACAAGGAGAAGGATGTAGCAGAGGAAGCTTGGGGGAAAGAAGTCCCAGCCCTTAAAGGCGGTGATGATCAGAATGAAGCACCTGAATACAAGCGTTTGATTGCTATTCATGCTGGAAAGGGAAAAGGTGGATTAGACGATTGGCTGAGAGTAGATCCTAATAAAGTGAGACGGCTTAGCCTAAGTGAGCAAGAGCTTGAAAAGGCTGTAGTAACTCATGGAAAAGAAATCGTCAGGTTTACCCAGCGGAATATTCTGAGGGTGTACCCAAAGGGTATACGTTTTGACTCCTCCAACTACAACCCACTGATTGGGTGGATGCACGGAGCTCAGATGGTTGCATTTAATATGCAGGGCTATGGAAGATCGCTGTGGGTGATGCACGGAATGTTCAGGAAGAACGGTGGTTGTGGATATGTTAAAAAGCCAGATTTCTTATTGAATTCTGTTGAGGCTTTTGATCCTAGAGCAAAGCTACCAGTGAAAAAAATTCTGAAGGTGACTGTTTATATGGGTGAAGGATGGTATTTTGATTTCCGTCACACACATTTTGATGCTTATTCGCCTCCAGATTTCTATGCAAGGGTAGGAATTGCTGGAGTTGGTGTTGATACAGTAATGAAGAAAACGAAGACGCTTGAGGACAACTGGATACCAAATTGGAATGAAGAGTTTGAGTTCCCGTTAACGGTTCCAGAACTGGCTCTGCTTAGGATTGAAGTACACGAGTATGACATGTCTGAAAAAGATGACTTTGGAGGCCAGACATGCCTACCTGTTTCGGAGCTGAGAAGTGGTATCCGAGCAGTTCCACTCCATAGTAATAAGGGGGACAAGTACAAATCTGTAAAGCTTCTTATGCGCTTTGAGTTTGTTTGA

Network for GWHGAAZE003298

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09279.12	EF-hand_like	25	94	0.00012
PF00388.20	PI-PLC-X	111	253	1.80E-48
PF00387.20	PI-PLC-Y	330	416	6.20E-28
PF00168.31	C2	457	537	5.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05857	PLCD	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0007165	biological_process	signal transduction
GO:0035556	biological_process	intracellular signal transduction
GO:0004435	molecular_function	phosphatidylinositol phospholipase C activity
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	102.880
	SRR3591706	second leaf	64.987
	SRR3591707	mature leaf	79.314
	SRR3591708	Shoot apex	62.840
	SRR3591709	Stem	135.886
	SRR3591710	White floral bud	50.708
	SRR3591711	White flower	70.804
	SRR3591712	Green floral bud	53.979
	SRR3591713	Yellow flower	93.861
SRP173429	SRR8316895	Juvenile bud stage	46.371
	SRR8316896	Juvenile bud stage	62.085
	SRR8316897	Juvenile bud stage	28.507
	SRR8316894	Third green stage	30.946
	SRR8316900	Third green stage	87.506
	SRR8316901	Third green stage	76.191
	SRR8316898	Complete white stage	54.305
	SRR8316899	Complete white stage	151.139
	SRR8316903	Complete white stage	94.273
	SRR8316902	Silver flowering stage	39.130
	SRR8316904	Silver flowering stage	64.739
	SRR8316905	Silver flowering stage	38.176
	SRR8316906	Gold flowering stage	87.404
	SRR8316907	Gold flowering stage	83.411
	SRR8316908	Gold flowering stage	79.714
SRP132670	SRR6706286	Control	90.496
	SRR6706287	Light intensity 50%	93.261
	SRR6706288	Light intensity 20%	98.415
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	47.603
	CNS0095593	Slightly white alabastrum(diploid) 2	55.700
	CNS0095594	Slightly white alabastrum(diploid) 3	41.701
	CNS0095595	Whole white alabastrum(diploid) 2	59.679
	CNS0095596	Whole white alabastrum(diploid) 3	52.636
	CNS0095597	Whole white alabastrum(diploid) 4	64.217
	CNS0095598	Silvery flower (diploied) 1	94.959
	CNS0095599	Silvery flower (diploied) 2	76.330
	CNS0095600	Silvery flower (diploied) 3	133.061
	CNS0095601	Golden flower (diploid) 1	73.240
	CNS0095602	Golden flower (diploid) 2	149.995
	CNS0095603	Golden flower (diploid) 3	156.929
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.695
	CNS0095605	Slightly white alabastrum(tetraploid) 2	59.684
	CNS0095606	Slightly white alabastrum(tetraploid) 3	108.531
	CNS0095607	Whole white alabastrum(tetraploid) 1	67.474
	CNS0095608	Whole white alabastrum(tetraploid) 2	66.937
	CNS0095609	Whole white alabastrum(tetraploid) 3	72.533
	CNS0095610	Silvery flower (tetraploid) 1	111.534
	CNS0095611	Silvery flower (tetraploid) 2	138.765
	CNS0095612	Silvery flower (tetraploid) 3	59.027
	CNS0095613	Golden flower (tetraploid) 1	91.827
	CNS0095614	Golden flower (tetraploid) 2	111.583
	CNS0095615	Golden flower (tetraploid) 3	118.577
CRA001975	CRR073297	Stem 1	67.433
	CRR073298	Stem 2	64.314
	CRR073299	Stem 3	65.706
	CRR073300	Leaf 1	95.906
	CRR073301	Leaf 2	86.830
	CRR073302	Leaf 3	83.809
	CRR073303	Juvenile bud 1	122.838
	CRR073304	Juvenile bud 2	80.595
	CRR073305	Juvenile bud 3	212.870
	CRR073306	Third green 1	75.765
	CRR073307	Third green 2	74.758
	CRR073308	Third green 3	82.380
	CRR073309	Second white 1	64.321
	CRR073310	Second white 2	39.390
	CRR073311	Second white 3	37.625
	CRR073312	Silver flowering 1	30.653
	CRR073313	Silver flowering 2	39.410
	CRR073314	Silver flowering 3	28.275
	CRR073315	Gold flowering 1	49.510
	CRR073316	Gold flowering 2	52.728
	CRR073317	Gold flowering 3	57.770
	CRR073318	Tawny withering 1	80.674
	CRR073319	Tawny withering 2	61.049
	CRR073320	Tawny withering 3	81.422