Gene detail

Detail information of GWHGAAZE003299

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_004500492.1	PREDICTED: NF-X1-type zinc finger protein NFXL2-like [Cicer arietinum]
Swissprot	tr\|Q9FFK8\|NFXL2_ARATH	NF-X1-type zinc finger protein NFXL2
trEMBL	tr\|A0A059A9U3\|A0A059A9U3_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW50474.1}
TAIR10	AT5G05660.1	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95576650	95584080	+
GWHAAZE00000001	mRNA	95576650	95584080	+
GWHAAZE00000001	exon	95576650	95577336	+
GWHAAZE00000001	exon	95578020	95578223	+
GWHAAZE00000001	exon	95578520	95578633	+
GWHAAZE00000001	exon	95578714	95578769	+
GWHAAZE00000001	exon	95578961	95579027	+
GWHAAZE00000001	exon	95579515	95579607	+
GWHAAZE00000001	exon	95579848	95579933	+
GWHAAZE00000001	exon	95580016	95580181	+
GWHAAZE00000001	exon	95580267	95580440	+
GWHAAZE00000001	exon	95580592	95580782	+
GWHAAZE00000001	exon	95583019	95583100	+
GWHAAZE00000001	exon	95583402	95583620	+
GWHAAZE00000001	exon	95583743	95583826	+
GWHAAZE00000001	exon	95583922	95584080	+
GWHAAZE00000001	CDS	95576650	95577336	+
GWHAAZE00000001	CDS	95578020	95578223	+
GWHAAZE00000001	CDS	95578520	95578633	+
GWHAAZE00000001	CDS	95578714	95578769	+
GWHAAZE00000001	CDS	95578961	95579027	+
GWHAAZE00000001	CDS	95579515	95579607	+
GWHAAZE00000001	CDS	95579848	95579933	+
GWHAAZE00000001	CDS	95580016	95580181	+
GWHAAZE00000001	CDS	95580267	95580440	+
GWHAAZE00000001	CDS	95580592	95580782	+
GWHAAZE00000001	CDS	95583019	95583100	+
GWHAAZE00000001	CDS	95583402	95583620	+
GWHAAZE00000001	CDS	95583743	95583826	+
GWHAAZE00000001	CDS	95583922	95584080	+

Transcript Sequence
>GWHTAAZE003305 ATGACCTCAACGACCACCGTCCCTCCATTATCCTCCGATTCCGGCAGTGACTCAGACACCAACGCCACCGACAACCTCCACCACACCGACCTCTCGGACACCATCTTCAGATCTTACATCGAGATCACCGGTGCTTCATCCCCGGACCTCGTCAAAATCCAGTCATTCCTCATATCCTCACGCTCCGGCGCACTATCATGCCTCATATGCCTGGAGCGAATCCGACCGTCCGATCCAACTTGGTCCTGCTCCTCCCGTTGTTACGCCGTTTTCCACCTCCTCTGCATCCAGAGCTGGGCCCGCCAGTCCTCCGATTTGGCCGCCGCACGTGCCGCTACTCGTCTTCCCATAACCCCCTCACGTGCCGCCTCCGATGACCACTCCATCTGGAACTGCCCCAAATGCCGAATCGAGTACCCCAAAACCCTAATCCCGAGGAAGTACACATGCTTCTGTGGGAAGTTAGAGAATCCACCTCACGATCCGTGGGTTTTGCCTCATTCGTGTGGCGAAATTTGTGATAAACCATTGATGTATGAATGTGGACATTACTGTTTGCTTTTGTGCCACCCCGGTCCTTGCCCTTCCTGCCCTAAGCTCGTCAAAACTCGGTGTTTCTGCGGGGCAATCCAGGACGTTAAGCGGTGTGGATTCAAAAACTTCTCTTGCAATGGCACTTGCTCCAGGGGGAAGAGGAATTGTCCGTGTGGGAAGAGGGTTTACGAAGGGATAGCTTGTGATGTTGTAGTGCCTATGTGCGGGGCCACTTGTGACAAGAAGCTCAGGTGTGGCCTCCATAGGTGCCCGGAGCGATGTCATCGTGGTCCGTGCATTGAGACTTGTAGAGTTGTTGTCACAAAGTCGTGTAGGTGTGGGAGCTTGAGGAAACAGGTACCTTGTTATCAAGATTTGACTTGTGAAAGGAAGTGTCAGACAGTTAGGGATTGTGGACGCCATGCTTGTAAGCGACGCTGCTGCGATGGGGATTGCCCTCCTTGTTCTGAGATTTGTGAGAGGAAGCTTCGGTGTAAGAACCACAAATGCCCTGCTCCGTGCCACAGAGGTGTCTGTGCTCCTTGTCCAGTGATGGTGACTATTTCATGTTCATGTGGCGAGACACACTTTGAGGTTCCTTGTGGCACAGAAATGGATCAAAAGCCTCCTAGATGCCCCAAACTATGTAGTATAGCTCCTTTATGCAGGCATGTATCAATATGCAAGCCACACAAGTGCCATTATGGAGCTTGTCCCCCATGTCGGCTAATTTGTGAAGAAGAATACCCATGTGGACACAAGTGCAAATTAAGGTGTCATGGTCCTAAGCCGCCTCCTAATCCGGAATTCACACTAAAACCGAAGAAAAAGAAGCAGCATCATCATCAGAGTGAATGCACTCCTGGTTTGCCTTGCCCGCCGTGCCCTGAACTAGTTTGGAGGTCATGTGCGGGCTATCATTTTGCAGCTGAAAGGATGATGGTCTGCTCGAATAAAGCAGAATTTTCTTGTGACAATTTGTGTGGAAATCTACTTCCTTGTAGCAACCATTATTGCACTAAAACTTGCCATGCCCTGGACAATCCCTCTTCAACACCGGGTCGGCTTGAAAGAGGCGAGCCCTGTGAAGAGTGTAATCTTCCTTGCCAAAAGGAGAGAGAGCCTGCATGTCAACATCGTTGCCCCTTGAAATGCCATCCTGAAGAATGTCCGCCTTGCAAAGTGCTGATAAAGCGTTCATGTCATTGTGGCGCAATGGTACATGTTTTTGAGTGTGCATATTACATTCGCTTGTCTCAAAAGGAGCAATCAGCTGTTCGTTCATGTAGAGGACCGTGCCATAGAAAGTTACCCAATTGTACACATCTATGCCCAGAGACATGTCATCCTGGTCAATGCCCGCCACCAGAAAAGTGCTCTAAAAAGGTTACTGTACGGTGTGCTTGCCAAACCTTGAAGAAAGAATGGGCTTGCCATGAGGTACAAGAGGCATATCGCAATGCGGGTTCTGATCCAAAAGATTATTTATCTAAAAATCAATTTGGAGTTGGACTTCTTCCTTGCAACTTAGATTGCAAGAGTAAAGTAAATGTTGCTGATTCAGAGTTGCAACTCCGTAAATCTAAAGTTCCAGAGGTGATGGCCAAGGAACCAGATCCGGTGATACCAAAGCGTAGGAAAAGACGAGGTCGGGTACTAGAAGAAGATGAGCAGATTTCAAGATTTCAGAAAATAATTGCCAGTTTGCAGAAGCTTATTGTGCTCGTTGTCCTAGTGATGACTCTAATTGCTTCAGCATATTATGGTTACAAGGGCCTCTTCTGGTTGTCCGATTGGATGAATGAAGTTGAAGTACAAAGACGAAGAACCAGGTATCCACGAGTATAA

Network for GWHGAAZE003299

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01422.18	zf-NF-X1	181	198	0.0026
PF01422.18	zf-NF-X1	263	282	0.0035
PF01422.18	zf-NF-X1	316	334	0.00049
PF01422.18	zf-NF-X1	343	361	0.033
PF01422.18	zf-NF-X1	410	420	2.6
PF01422.18	zf-NF-X1	429	438	1.10E+02
PF01422.18	zf-NF-X1	512	522	2.9
PF01422.18	zf-NF-X1	556	572	12
PF01422.18	zf-NF-X1	619	633	1.8

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NF-X1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.496
	SRR3591706	second leaf	11.201
	SRR3591707	mature leaf	12.141
	SRR3591708	Shoot apex	14.400
	SRR3591709	Stem	15.278
	SRR3591710	White floral bud	14.981
	SRR3591711	White flower	12.464
	SRR3591712	Green floral bud	12.350
	SRR3591713	Yellow flower	9.505
SRP173429	SRR8316895	Juvenile bud stage	8.984
	SRR8316896	Juvenile bud stage	15.082
	SRR8316897	Juvenile bud stage	7.072
	SRR8316894	Third green stage	6.598
	SRR8316900	Third green stage	16.045
	SRR8316901	Third green stage	16.082
	SRR8316898	Complete white stage	5.348
	SRR8316899	Complete white stage	17.114
	SRR8316903	Complete white stage	11.832
	SRR8316902	Silver flowering stage	6.221
	SRR8316904	Silver flowering stage	9.095
	SRR8316905	Silver flowering stage	3.635
	SRR8316906	Gold flowering stage	11.013
	SRR8316907	Gold flowering stage	11.451
	SRR8316908	Gold flowering stage	13.216
SRP132670	SRR6706286	Control	15.680
	SRR6706287	Light intensity 50%	15.925
	SRR6706288	Light intensity 20%	16.552
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.326
	CNS0095593	Slightly white alabastrum(diploid) 2	6.387
	CNS0095594	Slightly white alabastrum(diploid) 3	6.682
	CNS0095595	Whole white alabastrum(diploid) 2	6.430
	CNS0095596	Whole white alabastrum(diploid) 3	5.574
	CNS0095597	Whole white alabastrum(diploid) 4	5.964
	CNS0095598	Silvery flower (diploied) 1	9.342
	CNS0095599	Silvery flower (diploied) 2	8.273
	CNS0095600	Silvery flower (diploied) 3	13.067
	CNS0095601	Golden flower (diploid) 1	8.228
	CNS0095602	Golden flower (diploid) 2	12.375
	CNS0095603	Golden flower (diploid) 3	11.196
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.567
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.097
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.768
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.125
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.178
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.768
	CNS0095610	Silvery flower (tetraploid) 1	14.235
	CNS0095611	Silvery flower (tetraploid) 2	12.643
	CNS0095612	Silvery flower (tetraploid) 3	16.496
	CNS0095613	Golden flower (tetraploid) 1	6.948
	CNS0095614	Golden flower (tetraploid) 2	10.543
	CNS0095615	Golden flower (tetraploid) 3	11.711
CRA001975	CRR073297	Stem 1	22.264
	CRR073298	Stem 2	17.586
	CRR073299	Stem 3	12.482
	CRR073300	Leaf 1	22.215
	CRR073301	Leaf 2	19.383
	CRR073302	Leaf 3	13.566
	CRR073303	Juvenile bud 1	9.853
	CRR073304	Juvenile bud 2	6.858
	CRR073305	Juvenile bud 3	12.275
	CRR073306	Third green 1	3.332
	CRR073307	Third green 2	3.098
	CRR073308	Third green 3	3.608
	CRR073309	Second white 1	2.759
	CRR073310	Second white 2	5.616
	CRR073311	Second white 3	6.125
	CRR073312	Silver flowering 1	5.314
	CRR073313	Silver flowering 2	6.617
	CRR073314	Silver flowering 3	4.867
	CRR073315	Gold flowering 1	4.566
	CRR073316	Gold flowering 2	9.879
	CRR073317	Gold flowering 3	3.565
	CRR073318	Tawny withering 1	14.370
	CRR073319	Tawny withering 2	12.167
	CRR073320	Tawny withering 3	10.732