Gene detail

Detail information of GWHGAAZE003303

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272110.1	0	PREDICTED: uncharacterized protein LOC100260392 [Vitis vinifera]
COG	YP_004981568.1	1E-15	negative regulator of genetic competence
Swissprot	tr\|P31541\|CLPAA_SOLLC	8E-14	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic (Precursor)
trEMBL	tr\|A0A061FKC4\|A0A061FKC4_THECC	0	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative {ECO:0000313\|EMBL:EOY17765.1}
TAIR10	AT2G29970.1	0	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95691835	95698480	+
GWHAAZE00000001	mRNA	95691835	95698480	+
GWHAAZE00000001	exon	95691835	95691856	+
GWHAAZE00000001	exon	95694163	95695318	+
GWHAAZE00000001	exon	95696033	95696279	+
GWHAAZE00000001	exon	95696780	95698480	+
GWHAAZE00000001	CDS	95691835	95691856	+
GWHAAZE00000001	CDS	95694163	95695318	+
GWHAAZE00000001	CDS	95696033	95696279	+
GWHAAZE00000001	CDS	95696780	95698480	+

Transcript Sequence
>GWHTAAZE003309 ATGATTATAAAAGCTTCACCCAAGGCGGCACAAGCCTTGGACGAGGCGGTCTCCGTTGCCCGCCGTCGCGGCCATGCTCAGACAACCTCACTCCATGCCGTCTCCGCCCTCCTCTCCATTCCCTCGTCTTCGCTCCGGGAGGCATGTGGGCGAGCCCGGAACGGTTCCTACTCTTCTCGTATACAATTCAAGGCTTTAGAGCTCTGTCTCGGCGTCTCTCTCGACCGAATCCCTTCAGCTCCGGCACGCGTCGACGATCCTCCGGTATCCAACTCCCTCATGGCCGCCGTCAAAAGGTCTCAGGCCAATCAGAGGCGGCAGCCTGATAATTTCCATTTTTATCAGCAGCAACAACAACAATCATCTTCGTCCTCAATCACGACAGTGAAAGTCGAGCTGAGGAATCTGATCCTATCGATTCTCGATGATCCAGTCGTCAGTAGGGTGTTTGGCGAGGCCGGATTTCGAAATTGCGATATTAAATTAGCAATTCTTCGACCTGTTCACCAACTTTTACGTTATTCTCGTTATAAAGGACCACCAATGTTTCTCTGCAATTTGAACGATGATGATACGGATCGCCGGGGTTTTAGCAATTTTACCTTCCCCTACATGGGTTTCACTGGCTACTTTAATGGCGATGAGAATTGCAGGAGGATAGGAGAAGTCCTTGTACGAAAGAAGGGGCGGAATCCGCTGCTGGTGGGTGTTTGTGCTATTGATGCTCTTAGAAATTTTTGTGAAATGGTACAAAACAGAGGAGGAGGATGTGTTTTTCCTCTTGAATTATCTGGTTTGAGTGTGATTTATATTGAAAATGAAGTAATCAAGTTTGTTACGGGTAATTATGGTGAGGGGTTGTTGAAGTTGAAGTTTGAAGAGGTGGGTGGTTTATTAGATCATTGTGTTGGAGGTGGTTTGGTTGTTAATTTCGGAGATTTGCATGGATTGGTTGGTGATAATGCCTCGGTTGATGCTATGAGCTATGTTATTCGCGAGCTGGCTAAATTATTGAATCTTTATGGGGAAAAAGTGTGGCTGATTGGAGCTACGGCTAGTTACGAAACATTTATGAAAATTTTGAATAAATTTCCATCCATGGAAAAGGATTGGGACTTACAGGTTCTTCCAATCACTTCTCCTAGAACTTCCATGGCAGAATCTTACCCGAGATCCAGCTTGATGGAGTCCTTTGTTCCTTTTGGAGGCTTCTTTTCTGCACCTTCTGATACTAAGAACTCAATAAGCGGTTCCTACCCATCTGTATCCCGCTGTCACCCATGCAATTACAAGTGTGAACAAGAAGTAACAGCTCTTTCAAAAGGAGGATACTCTTCTTCAGTAGCAGATCAGTACCAATCTAGCTTACCCTCCTGGTTACAGATGGCTGAATTTGGCAATAACCGTGGATTGGATGTTATAAAGGCCAAAGATGATGATGGCATGGTACTGACTGCTAAAGTTGCAAGGCTACAAAAGAAATGGGACAACATTTGCCACCATCTTCATTATACTCAACACTTGCCCAAGGCCGATTCTTACCAAGTTGGCTCCCAAGTTCCAGCTGTTGTTGGCTTTCAACTTGTCCAAGGCAAAAAGGCAAATCTTGCTGATCACAGCAGCAACAACACGAATGAATCTTCGATCGAGAGCGGATGTAAAAATATAATCTCATCAACTTCAATGGACTTGCAACAAAATTCTCCCCCCAAACCAAGCACTCCTCCAGCTGTAATTTCAAAACCAGTGAATGTTAATTTCTTTTCCAAATTGCGCAGAGAAAATTCAAAAACTGAAGATGATGGTTGGACATCTCCAACCCCAGCTACTTCTGTTACTACGGATTTAGGTTTGGGAATACCCTCTGCTAAATCTTTATCAAGCTCCTCTTTTCCTGATTTTCATGGACTGTTTGATCAAAAAGATTTCAAGATGCTTTACAATTCGCTGTATAGTAGGATTGGTAGGCAAGAAGAAGCCGTAACTGCTATTTGCCAAACAATTGTACGAAGCAGGACAAGAAATGAGAAGCGCCACGGAGTAAGTCGAGTTGTTATATGGTTCAATTTTCTTGGACCCGATACACTTGGTAAGAAGAAAATCGCCATTTCCCTTGCTGAGATATTGTTTGGAAGCAGGGAAAGTTTTATCCATTTGAATCTTGGTTTTGAGGATGGTATGATCCAAGAAATAAAAGATTATGAAACAAAATTCAGAGGGAAGACTGTTGTTGATTATATTGCTGAGGAATTGAACAAGAAACCCCTTTCTGTTGTTTATCTTGAAAATATAGAGAATGCTGATCTGCAGGCTCAAAAAAGTTTGTCCCAAGCTGTGAGGACCGGTAGATTTTCAGATTCGCATGGAAGAGAAGTCAGCATTGGTAATACAATATTTGTGACAACTTCAAGATACACAGAGGTCAACATAATTCAATTTTCTTCGAATAAGACCAACAACTATTTCGAGGAAAATGTGTTAAGGGCAAAGGGCGGTCCAATCCAAATGTTAATTGGATTTGATCTTGGTGACACCAGCATAAGCCAAAACTTGAGGGTATTGGATATCGCCAGAAAAGGCAGCTGCTCTAGTCCAACTTTGATGAACAAAAGAAAACTGATTGGTAGTAACGAAGCCTTTGAACAAAGTCAAACCTTGGAGATTGCAAAACGGGCCCACAAGGCGTCAAATACGTACATGGACTTGAATCTCCCAGCTGAAGAGAGTGAAATATGCAAAGGCGATTATGGGAATTTCGACTCTGACTCCAGTTCATGGTTGAAAGATTTCTTTGAACAAGTTGATGAAACAGTGATTTTTAAGCCGTTTGATTATGACACAAAAGCCGAGAAAATACAGGAGGAGATTAATGGGTACTTCCGGAAGATCGTTGGGTCACAGGGTTTGTTAGAGATCGATTCGATGGTGATGGATCAACTACTTGCAGCTGCGTGTTTATTGGAGAAAAATAGTGTGAGCCAATGGGTGGAGCAGATTCTTGGTAGGGCATTTGCAGAAGCAAAGAAGAGGTATAATCTAAGCTCTGGATCTGTTGTTCAACTTGTTAATTGTGAGGAGGATGAGGCTCGCGGAGAACTCCTTCCTGACAGAATTATGATGAACTAG

Network for GWHGAAZE003303

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07724.15	AAA_2	686	817	7.80E-07

Protein Sequence

>GWHPAAZE003306
MIIKASPKAAQALDEAVSVARRRGHAQTTSLHAVSALLSIPSSSLREACGRARNGSYSSRIQFKALELCLGVSLDRIPSAPARVDDPPVSNSLMAAVKRSQANQRRQPDNFHFYQQQQQQSSSSSITTVKVELRNLILSILDDPVVSRVFGEAGFRNCDIKLAILRPVHQLLRYSRYKGPPMFLCNLNDDDTDRRGFSNFTFPYMGFTGYFNGDENCRRIGEVLVRKKGRNPLLVGVCAIDALRNFCEMVQNRGGGCVFPLELSGLSVIYIENEVIKFVTGNYGEGLLKLKFEEVGGLLDHCVGGGLVVNFGDLHGLVGDNASVDAMSYVIRELAKLLNLYGEKVWLIGATASYETFMKILNKFPSMEKDWDLQVLPITSPRTSMAESYPRSSLMESFVPFGGFFSAPSDTKNSISGSYPSVSRCHPCNYKCEQEVTALSKGGYSSSVADQYQSSLPSWLQMAEFGNNRGLDVIKAKDDDGMVLTAKVARLQKKWDNICHHLHYTQHLPKADSYQVGSQVPAVVGFQLVQGKKANLADHSSNNTNESSIESGCKNIISSTSMDLQQNSPPKPSTPPAVISKPVNVNFFSKLRRENSKTEDDGWTSPTPATSVTTDLGLGIPSAKSLSSSSFPDFHGLFDQKDFKMLYNSLYSRIGRQEEAVTAICQTIVRSRTRNEKRHGVSRVVIWFNFLGPDTLGKKKIAISLAEILFGSRESFIHLNLGFEDGMIQEIKDYETKFRGKTVVDYIAEELNKKPLSVVYLENIENADLQAQKSLSQAVRTGRFSDSHGREVSIGNTIFVTTSRYTEVNIIQFSSNKTNNYFEENVLRAKGGPIQMLIGFDLGDTSISQNLRVLDIARKGSCSSPTLMNKRKLIGSNEAFEQSQTLEIAKRAHKASNTYMDLNLPAEESEICKGDYGNFDSDSSSWLKDFFEQVDETVIFKPFDYDTKAEKIQEEINGYFRKIVGSQGLLEIDSMVMDQLLAAACLLEKNSVSQWVEQILGRAFAEAKKRYNLSSGSVVQLVNCEEDEARGELLPDRIMMN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0019538	biological_process	protein metabolic process
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	14.931
	SRR3591706	second leaf	6.875
	SRR3591707	mature leaf	25.640
	SRR3591708	Shoot apex	6.879
	SRR3591709	Stem	23.460
	SRR3591710	White floral bud	4.738
	SRR3591711	White flower	19.337
	SRR3591712	Green floral bud	10.830
	SRR3591713	Yellow flower	2.903
SRP173429	SRR8316895	Juvenile bud stage	4.196
	SRR8316896	Juvenile bud stage	5.209
	SRR8316897	Juvenile bud stage	1.216
	SRR8316894	Third green stage	5.002
	SRR8316900	Third green stage	12.136
	SRR8316901	Third green stage	12.082
	SRR8316898	Complete white stage	1.214
	SRR8316899	Complete white stage	19.268
	SRR8316903	Complete white stage	3.287
	SRR8316902	Silver flowering stage	4.943
	SRR8316904	Silver flowering stage	3.541
	SRR8316905	Silver flowering stage	0.615
	SRR8316906	Gold flowering stage	1.215
	SRR8316907	Gold flowering stage	1.071
	SRR8316908	Gold flowering stage	0.858
SRP132670	SRR6706286	Control	5.938
	SRR6706287	Light intensity 50%	7.517
	SRR6706288	Light intensity 20%	8.500
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.524
	CNS0095593	Slightly white alabastrum(diploid) 2	8.749
	CNS0095594	Slightly white alabastrum(diploid) 3	4.304
	CNS0095595	Whole white alabastrum(diploid) 2	6.334
	CNS0095596	Whole white alabastrum(diploid) 3	3.979
	CNS0095597	Whole white alabastrum(diploid) 4	3.387
	CNS0095598	Silvery flower (diploied) 1	1.249
	CNS0095599	Silvery flower (diploied) 2	1.305
	CNS0095600	Silvery flower (diploied) 3	4.053
	CNS0095601	Golden flower (diploid) 1	0.667
	CNS0095602	Golden flower (diploid) 2	0.674
	CNS0095603	Golden flower (diploid) 3	0.428
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.914
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.903
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.283
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.744
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.980
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.741
	CNS0095610	Silvery flower (tetraploid) 1	13.569
	CNS0095611	Silvery flower (tetraploid) 2	2.212
	CNS0095612	Silvery flower (tetraploid) 3	1.615
	CNS0095613	Golden flower (tetraploid) 1	1.054
	CNS0095614	Golden flower (tetraploid) 2	1.347
	CNS0095615	Golden flower (tetraploid) 3	0.505
CRA001975	CRR073297	Stem 1	6.869
	CRR073298	Stem 2	8.404
	CRR073299	Stem 3	6.156
	CRR073300	Leaf 1	10.683
	CRR073301	Leaf 2	9.439
	CRR073302	Leaf 3	5.036
	CRR073303	Juvenile bud 1	6.468
	CRR073304	Juvenile bud 2	0.940
	CRR073305	Juvenile bud 3	11.900
	CRR073306	Third green 1	5.494
	CRR073307	Third green 2	4.559
	CRR073308	Third green 3	7.243
	CRR073309	Second white 1	6.067
	CRR073310	Second white 2	6.713
	CRR073311	Second white 3	5.231
	CRR073312	Silver flowering 1	3.545
	CRR073313	Silver flowering 2	2.641
	CRR073314	Silver flowering 3	4.674
	CRR073315	Gold flowering 1	11.776
	CRR073316	Gold flowering 2	15.552
	CRR073317	Gold flowering 3	10.383
	CRR073318	Tawny withering 1	7.597
	CRR073319	Tawny withering 2	7.101
	CRR073320	Tawny withering 3	8.283