Gene detail

Detail information of GWHGAAZE003304

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002312162.1	0	oxidoreductase family protein [Populus trichocarpa]
COG	NP_252880.1	2E-32	iron/ascorbate oxidoreductase
Swissprot	tr\|Q39224\|SRG1_ARATH	6E-77	Protein SRG1
trEMBL	tr\|B9HHQ5\|B9HHQ5_POPTR	0	Oxidoreductase family protein {ECO:0000313\|EMBL:EEE89529.1}
TAIR10	AT5G05600.1	2E-141	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95748247	95753876	-
GWHAAZE00000001	mRNA	95748247	95753876	-
GWHAAZE00000001	exon	95748247	95748495	-
GWHAAZE00000001	exon	95752529	95752859	-
GWHAAZE00000001	exon	95753321	95753876	-
GWHAAZE00000001	five_prime_UTR	95753812	95753876	-
GWHAAZE00000001	CDS	95753321	95753811	-
GWHAAZE00000001	CDS	95752529	95752859	-
GWHAAZE00000001	CDS	95748247	95748495	-

Transcript Sequence
>GWHTAAZE003310 AACCCAAGTACTCGTTTGTTTCATCGAATGATTACAGTATCAACCTCGAAACCCAAACTAAAAACATGAATAAACTAAACGATTGGCCTGAACCAATAATCCGTGTCCAATCCTTATCCGACAGCAAACTATCCCTTATCCCCGATCGATATATCAGACCTCTACTAGATCGGCCAACCTTAAACTCTGACAAAAACGACGCCAACATCCCATCAATTGACCTGAGAGGTCTTGCCGGAGATAAAAATCTCAGGTCAACTACTATGAACCAAATCTCACACGCGTGTAGGGAGTGGGGATTTTTCCAAGTTGTGAACCATGGAGTGAGTCCTCTACTGATGGACCGTGTTCGTGAAGTTTGGCGCCACTTCTTTTATCAACCGTCGGAGGTTAAACAAATGTATGCAAACTCCCCAAAGACTTATGAAGGTTATGGAAGCCGATTGGGTGTCGAAAAAGGCGCTATTCTGGATTGGAGTGACTACTACTTCCTTCACTACCTTCCTTGTTCATTGATGGACCCTAATAAGTGGCCTGCCCTTCCTTCTTCTCTCCGGGAAGTGGTGGATGAATATTCAAGGGAAGTGGTGAAGATGTGTGGAGTACTAATGAAGGTATTGTCGTTAAACCTTGGGCTGGGAGAGGAATATCTGCAACATGCTTTTGGTGGGGACAATATTGGAGCTTGCCTAAGAGTGAATTTTTATCCCAAGTGTCCACAACCCGACTTGACCCTAGGTCTCTCTTCTCACTCCGATCCAGGTGGCATGACAATTCTGCTGCCAGATCAGCACGTTCTAGGCCTCCAGGTCCGTAAACTTGACAACTGGATTACGGTCAAGCCAGCCCCTCATGCTTTTATCGTCAATATCGGCGATCAAATTCAGGTTGTAAGTAATGCAAGTTATAAGAGCGTTGAGCACAGAGTGGTAGTGAATTCAACTGAAAAGCGCCTCTCTCTTGCCTTCTTCTACAATCCGAAGAGCGATTTGCTTATAGAACCAGCAAAGAAGCTTGTCACACCAGATAAACCCGCATTGTACTCCCCTATGACGTTTGATGAATACAGACTTTTCATTAGGTTGAGAGGTCCCCGCGGAAAATCCCAAGTGGACTCTTTAAGATCTCCTAGATGA

Network for GWHGAAZE003304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14226.7	DIOX_N	48	158	3.60E-28
PF03171.21	2OG-FeII_Oxy	207	305	5.80E-26

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.166
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.259
	SRR3591708	Shoot apex	0.078
	SRR3591709	Stem	1.289
	SRR3591710	White floral bud	5.472
	SRR3591711	White flower	3.905
	SRR3591712	Green floral bud	4.399
	SRR3591713	Yellow flower	1.401
SRP173429	SRR8316895	Juvenile bud stage	1.046
	SRR8316896	Juvenile bud stage	1.162
	SRR8316897	Juvenile bud stage	1.381
	SRR8316894	Third green stage	0.094
	SRR8316900	Third green stage	0.329
	SRR8316901	Third green stage	0.736
	SRR8316898	Complete white stage	1.200
	SRR8316899	Complete white stage	6.749
	SRR8316903	Complete white stage	1.596
	SRR8316902	Silver flowering stage	0.243
	SRR8316904	Silver flowering stage	0.479
	SRR8316905	Silver flowering stage	0.135
	SRR8316906	Gold flowering stage	0.056
	SRR8316907	Gold flowering stage	0.495
	SRR8316908	Gold flowering stage	0.532
SRP132670	SRR6706286	Control	0.489
	SRR6706287	Light intensity 50%	0.707
	SRR6706288	Light intensity 20%	0.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.026
	CNS0095593	Slightly white alabastrum(diploid) 2	1.692
	CNS0095594	Slightly white alabastrum(diploid) 3	1.444
	CNS0095595	Whole white alabastrum(diploid) 2	1.269
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	1.195
	CNS0095598	Silvery flower (diploied) 1	2.134
	CNS0095599	Silvery flower (diploied) 2	2.450
	CNS0095600	Silvery flower (diploied) 3	1.893
	CNS0095601	Golden flower (diploid) 1	3.697
	CNS0095602	Golden flower (diploid) 2	3.605
	CNS0095603	Golden flower (diploid) 3	4.464
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.078
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.538
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.449
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.116
	CNS0095610	Silvery flower (tetraploid) 1	1.125
	CNS0095611	Silvery flower (tetraploid) 2	1.192
	CNS0095612	Silvery flower (tetraploid) 3	0.827
	CNS0095613	Golden flower (tetraploid) 1	0.568
	CNS0095614	Golden flower (tetraploid) 2	2.335
	CNS0095615	Golden flower (tetraploid) 3	0.523
CRA001975	CRR073297	Stem 1	0.935
	CRR073298	Stem 2	0.966
	CRR073299	Stem 3	0.206
	CRR073300	Leaf 1	0.940
	CRR073301	Leaf 2	1.210
	CRR073302	Leaf 3	0.866
	CRR073303	Juvenile bud 1	0.780
	CRR073304	Juvenile bud 2	0.676
	CRR073305	Juvenile bud 3	1.331
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.275
	CRR073308	Third green 3	1.439
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.067
	CRR073311	Second white 3	0.047
	CRR073312	Silver flowering 1	0.176
	CRR073313	Silver flowering 2	0.047
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.233
	CRR073317	Gold flowering 3	0.086
	CRR073318	Tawny withering 1	0.168
	CRR073319	Tawny withering 2	1.039
	CRR073320	Tawny withering 3	0.306