Detail information of GWHGAAZE003318


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002272821.16.28722E-82PREDICTED: LOB domain-containing protein 21 [Vitis vinifera]
Swissprottr|Q9SRL8|LBD21_ARATH2E-61LOB domain-containing protein 21
trEMBLtr|D7T4L7|D7T4L7_VITVI2E-82Putative uncharacterized protein {ECO:0000313|EMBL:CBI25449.3}
TAIR10AT3G11090.19E-45LOB domain-containing protein 21

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9594531295945824-
GWHAAZE00000001mRNA9594531295945824-
GWHAAZE00000001exon9594531295945824-
GWHAAZE00000001CDS9594531295945824-
Transcript Sequence

Network for GWHGAAZE003318

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB111088.10E-40
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.668
SRR3591706second leaf2.116
SRR3591707mature leaf0.759
SRR3591708Shoot apex10.529
SRR3591709Stem21.488
SRR3591710White floral bud3.914
SRR3591711White flower10.777
SRR3591712Green floral bud0.781
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.944
SRR8316896Juvenile bud stage 0.248
SRR8316897Juvenile bud stage 0.448
SRR8316894Third green stage 0.577
SRR8316900Third green stage 0.532
SRR8316901Third green stage 0.631
SRR8316898Complete white stage 2.397
SRR8316899Complete white stage 0.865
SRR8316903Complete white stage 2.169
SRR8316902Silver flowering stage4.588
SRR8316904Silver flowering stage3.146
SRR8316905Silver flowering stage1.348
SRR8316906Gold flowering stage 0.621
SRR8316907Gold flowering stage 4.209
SRR8316908Gold flowering stage 1.037
SRP132670SRR6706286Control0.458
SRR6706287Light intensity 50%0.558
SRR6706288Light intensity 20%0.602
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.000
CNS0095593Slightly white alabastrum(diploid) 20.216
CNS0095594Slightly white alabastrum(diploid) 31.966
CNS0095595Whole white alabastrum(diploid) 20.449
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.436
CNS0095598Silvery flower (diploied) 15.616
CNS0095599Silvery flower (diploied) 22.214
CNS0095600Silvery flower (diploied) 34.992
CNS0095601Golden flower (diploid) 11.976
CNS0095602Golden flower (diploid) 23.287
CNS0095603Golden flower (diploid) 32.801
CNS0095604Slightly white alabastrum(tetraploid) 16.022
CNS0095605Slightly white alabastrum(tetraploid) 21.850
CNS0095606Slightly white alabastrum(tetraploid) 37.346
CNS0095607Whole white alabastrum(tetraploid) 12.868
CNS0095608Whole white alabastrum(tetraploid) 20.683
CNS0095609Whole white alabastrum(tetraploid) 30.374
CNS0095610Silvery flower (tetraploid) 111.156
CNS0095611Silvery flower (tetraploid) 29.646
CNS0095612Silvery flower (tetraploid) 314.846
CNS0095613Golden flower (tetraploid) 12.184
CNS0095614Golden flower (tetraploid) 24.664
CNS0095615Golden flower (tetraploid) 30.432
CRA001975CRR073297Stem 10.000
CRR073298Stem 20.269
CRR073299Stem 31.001
CRR073300Leaf 10.129
CRR073301Leaf 20.605
CRR073302Leaf 30.684
CRR073303Juvenile bud 10.570
CRR073304Juvenile bud 20.676
CRR073305Juvenile bud 30.263
CRR073306Third green 110.649
CRR073307Third green 212.387
CRR073308Third green 310.820
CRR073309Second white 13.384
CRR073310Second white 21.233
CRR073311Second white 30.619
CRR073312Silver flowering 10.266
CRR073313Silver flowering 21.468
CRR073314Silver flowering 30.291
CRR073315Gold flowering 10.071
CRR073316Gold flowering 20.957
CRR073317Gold flowering 31.298
CRR073318Tawny withering 113.216
CRR073319Tawny withering 23.934
CRR073320Tawny withering 317.390