Gene detail

Detail information of GWHGAAZE003323

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP13981.1	0	unnamed protein product [Coffea canephora]
COG	YP_822407.1	2E-12	serine/threonin protein kinase
Swissprot	tr\|C0LGQ4\|MRH1_ARATH	3E-149	Probable LRR receptor-like serine/threonine-protein kinase MRH1 (Precursor)
trEMBL	tr\|A0A068UZY0\|A0A068UZY0_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_78 {ECO:0000313\|EMBL:CDP13981.1}
TAIR10	AT3G56050.2	2E-106	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	95985998	95989260	-
GWHAAZE00000001	mRNA	95985998	95989260	-
GWHAAZE00000001	exon	95985998	95986563	-
GWHAAZE00000001	exon	95986761	95986893	-
GWHAAZE00000001	exon	95986986	95987176	-
GWHAAZE00000001	exon	95987286	95987707	-
GWHAAZE00000001	exon	95987910	95988050	-
GWHAAZE00000001	exon	95988151	95988294	-
GWHAAZE00000001	exon	95988379	95988450	-
GWHAAZE00000001	exon	95988830	95988968	-
GWHAAZE00000001	exon	95989203	95989260	-
GWHAAZE00000001	CDS	95989203	95989260	-
GWHAAZE00000001	CDS	95988830	95988968	-
GWHAAZE00000001	CDS	95988379	95988450	-
GWHAAZE00000001	CDS	95988151	95988294	-
GWHAAZE00000001	CDS	95987910	95988050	-
GWHAAZE00000001	CDS	95987286	95987707	-
GWHAAZE00000001	CDS	95986986	95987176	-
GWHAAZE00000001	CDS	95986761	95986893	-
GWHAAZE00000001	CDS	95985998	95986563	-

Transcript Sequence
>GWHTAAZE003329 ATGGTACTCTGTTTTCTGCATCAGAATTTGAATTTTTGCTGGTCTCTCAATGATGAAGGCTTGGCTTTGTTGAGATTTAGGGAGAGAGTACTGAGTGATCCATTTGGAGCCTTGTCGAATTGGAACGATGATGTTGGAATTACTGATCCGTGTTCTTGGTATGGTGTTGAATGCTCAGATGGTAATGTTGTGGTTTTGAACCTGAAAAATCTGTGTCTTGGCGGAACAATATCTCCTGATCTTAGAAATCTGATTCACATAAAGTCAATTAACTTACGCAATAACTCTTTCTCCGGTATAATACCGGAAGAGATTAGCGAGTTGAAGGAGTTGGAGGTGTTGGATCTTGGATTCAATAATTTTAGTGGTCCGCTTCCGGCCGACCTGGGAAATAATTTTTCATTGTCAATCCTTCTACTGGACAACAATGAGCTTTTTGGTAGCGTTTCTCCTGAAATTCAAGAGTTTAAATTGATTTCAGAAGTTCAAGCAGATGAGAAGCATCTCTCTAATGCTGGGCAAAAATCAGCTTCCTCTAAACGATCCATTTCTTCGAACATCGCCCAAACTGGTATTATGGCTCTACGGAGAATACTCCAATCAGAAATCATTGATCAACCGCTACCTACACTGCCGTTACTTGAAGGGAATGCTCCATCACCATCACCATCACCATTGATATCGCAATCACCATCACCATCACCATCACCATCTTCGCCATCACCATCATCAGAACCCTCGGTTACCCCAAATCAGTCCATTGATTCTGTTTCGCCACCTTCCCTTTCTGCCCCATCACGTCCCCCAATAAGGTCCAATCAAAATCACCATGGAACTCTAATATTATCTGTTTCCATTGGGGGTTCAGTGTTCTTTTTCTTTTTGATCGCTGCCTTAGTCTTCTGTCGAACCGATAAGGTAGCCACTGTCAAAGCCTTGGGCCACTGGATTAAGTGGACAGCTGCAGAAAGCTTTTGTGTGCCAAAGCTCAAGAGATTGGAGCTTGAGGTAGCTTGTGAAGATTTCAGCAATGTGATTGGTACATCAACAATTGGAACGGTTTATAAAGGAACATTGTCAAGTGGGGTTGAAATAGCTGTGGCATCTCTCACAGTGATGTCAGCTAAGGATTGGTCTAAGAATTTGGAAGCCCAGTTCAGGAAGAAGATTGAGATGTTATCAAAAGTGAACCACAAGAATTTCGTCAACCTTCTTGGATTTTGTGAGGAAGAGGAGCCTTTCACTAGAATGATGGTTTTTGAGTATGCTCCTAATGGAACACTCTTTGAACATTTACACATTAAAGAAGCAGAACACTTGGACTGGCAAATGAGGATGAGGATTGCCATGGGAATGGCATACTGCCTCGAACACATGCACCAACTAAAGCCCCCCATAGCCCACAAAAACTTAACCTCGTCGTCTGTAAATCTCACAGAGGACTATGCAGCCAAGATATCGGATTACGGCCTATGGTACGAGCTACCAGCAACCGAAATGGAACCACGCCCAGAAAGCAACATTTATAGCTTTGGAGTTATACTGTTTGAGATTGTAACTGGCCGGACCCCATACTCCGTGGATGGTGGCACGTTAGATGACTGGGCATCGGACTATTTAAGAAGACAACCACCCCTTAGAGAAATGGTGGACCGCACATTGAATTCTTTTGAAGATGAGCAGCTTGAGAGAATTGGGGAGTTAATAAAAGATTGTGTACACGTTGATCTAAGGAGGAGACCGAGGATGAGAGAAGTTACAGCGAGACTGAGAGAGATAACTGAAATAGGACCAGATGGAGCAATACCAAAACTTTCTCCTCTTTGGTGGGCAGAGCTTGAGATTATGTCAACTGAAGCAACTTAA

Network for GWHGAAZE003323

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0241

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	17	59	1.20E-10
PF07714.18	PK_Tyr_Ser-Thr	342	495	1.50E-21

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-VI-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.344
	SRR3591706	second leaf	1.997
	SRR3591707	mature leaf	2.794
	SRR3591708	Shoot apex	3.402
	SRR3591709	Stem	41.841
	SRR3591710	White floral bud	18.393
	SRR3591711	White flower	18.040
	SRR3591712	Green floral bud	3.735
	SRR3591713	Yellow flower	16.833
SRP173429	SRR8316895	Juvenile bud stage	17.047
	SRR8316896	Juvenile bud stage	19.371
	SRR8316897	Juvenile bud stage	10.635
	SRR8316894	Third green stage	2.813
	SRR8316900	Third green stage	4.566
	SRR8316901	Third green stage	8.384
	SRR8316898	Complete white stage	2.322
	SRR8316899	Complete white stage	20.665
	SRR8316903	Complete white stage	5.191
	SRR8316902	Silver flowering stage	3.621
	SRR8316904	Silver flowering stage	4.624
	SRR8316905	Silver flowering stage	1.142
	SRR8316906	Gold flowering stage	6.616
	SRR8316907	Gold flowering stage	6.558
	SRR8316908	Gold flowering stage	13.969
SRP132670	SRR6706286	Control	4.419
	SRR6706287	Light intensity 50%	4.162
	SRR6706288	Light intensity 20%	2.799
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.417
	CNS0095593	Slightly white alabastrum(diploid) 2	15.527
	CNS0095594	Slightly white alabastrum(diploid) 3	12.977
	CNS0095595	Whole white alabastrum(diploid) 2	14.286
	CNS0095596	Whole white alabastrum(diploid) 3	1.644
	CNS0095597	Whole white alabastrum(diploid) 4	9.047
	CNS0095598	Silvery flower (diploied) 1	37.875
	CNS0095599	Silvery flower (diploied) 2	48.500
	CNS0095600	Silvery flower (diploied) 3	26.619
	CNS0095601	Golden flower (diploid) 1	54.389
	CNS0095602	Golden flower (diploid) 2	44.346
	CNS0095603	Golden flower (diploid) 3	43.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.545
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.932
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.351
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.910
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.644
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.176
	CNS0095610	Silvery flower (tetraploid) 1	7.630
	CNS0095611	Silvery flower (tetraploid) 2	8.523
	CNS0095612	Silvery flower (tetraploid) 3	15.909
	CNS0095613	Golden flower (tetraploid) 1	8.340
	CNS0095614	Golden flower (tetraploid) 2	8.402
	CNS0095615	Golden flower (tetraploid) 3	11.196
CRA001975	CRR073297	Stem 1	7.008
	CRR073298	Stem 2	5.754
	CRR073299	Stem 3	2.914
	CRR073300	Leaf 1	7.925
	CRR073301	Leaf 2	9.401
	CRR073302	Leaf 3	5.043
	CRR073303	Juvenile bud 1	3.547
	CRR073304	Juvenile bud 2	3.840
	CRR073305	Juvenile bud 3	8.250
	CRR073306	Third green 1	3.684
	CRR073307	Third green 2	5.504
	CRR073308	Third green 3	6.753
	CRR073309	Second white 1	2.649
	CRR073310	Second white 2	4.373
	CRR073311	Second white 3	4.932
	CRR073312	Silver flowering 1	22.520
	CRR073313	Silver flowering 2	14.648
	CRR073314	Silver flowering 3	13.266
	CRR073315	Gold flowering 1	6.706
	CRR073316	Gold flowering 2	11.936
	CRR073317	Gold flowering 3	9.103
	CRR073318	Tawny withering 1	25.852
	CRR073319	Tawny withering 2	39.333
	CRR073320	Tawny withering 3	32.742