Gene detail

Detail information of GWHGAAZE003345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU35231.1	0	hypothetical protein MIMGU_mgv1a011203mg [Erythranthe guttata]
Swissprot	tr\|P93798\|SNAA_VITVI	2E-158	Alpha-soluble NSF attachment protein
trEMBL	tr\|A0A022R4P1\|A0A022R4P1_ERYGU	0	Uncharacterized protein {ECO:0000313\|EMBL:EYU35231.1}
TAIR10	AT3G56190.1	2E-106	alpha-soluble NSF attachment protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96324387	96330620	-
GWHAAZE00000001	mRNA	96324387	96330620	-
GWHAAZE00000001	exon	96330476	96330620	-
GWHAAZE00000001	exon	96329541	96329590	-
GWHAAZE00000001	exon	96329358	96329430	-
GWHAAZE00000001	exon	96329056	96329135	-
GWHAAZE00000001	exon	96328247	96328398	-
GWHAAZE00000001	exon	96327649	96327808	-
GWHAAZE00000001	exon	96327515	96327562	-
GWHAAZE00000001	exon	96327135	96327215	-
GWHAAZE00000001	exon	96324387	96324467	-
GWHAAZE00000001	CDS	96330476	96330620	-
GWHAAZE00000001	CDS	96329541	96329590	-
GWHAAZE00000001	CDS	96329358	96329430	-
GWHAAZE00000001	CDS	96329056	96329135	-
GWHAAZE00000001	CDS	96328247	96328398	-
GWHAAZE00000001	CDS	96327649	96327808	-
GWHAAZE00000001	CDS	96327515	96327562	-
GWHAAZE00000001	CDS	96327135	96327215	-
GWHAAZE00000001	CDS	96324387	96324467	-

Transcript Sequence
>GWHTAAZE003351 ATGTCCGATCAGATTTCGAGAGGGGAAGAATTTGAGAAGCAAGCAGAGAAGAAACTCAGCAGTTGGGGTCTTTTTGGTTCCAAATACGAAGACGCGGTTGAATTATTCGAAAAAGCTGCCAATGCCTTCAAACTCGCCAAATCTTGGGACCAAGCTGGATCAGTTTATGTCAAATTGGCAAACTGTCACATAAAGTTGGAGAGCAAACATGAAGCTGCTAATGCATATGCCGATGCGGCCCATTGTTATAAGAAGACAAATACTGAAGAATCTATATCTTGCCTGGAGCAATCAGTCAATATGTTTATGGAGATTGGAAGGCTCAACATGGCTGCAAGATATTACAAGGAAATTGCCGAAATATGTGAACAAGAACAAAACTTGGAGCAGGCTATACACTACTACGATAAAGCAGCTGATCTTTTTCAAAGTGAAGAAGTAACAACTTCTGCAAATCAGTGCAAGCAGAAAATTGCTCAATATGCTGCTCAGCTTGAACATTACCAGAGAGCAATTGACATTTATGAGGAGATAGCACGTCAGTCACTTAACAATAACTTGCTGAAGTATGGAGTTAAAGGGCATCTGATAAATGCTGGCATTTGCCAACTATGTAAGGGAGATGTTGTTGCAATTACCAACGCATTGGAGCGATATCAGGAACTGGATCCTACCTTTTCAGGATCGCGAGAGTACAGATTGCTGGTGGATTTGTCTGCTGCAGTTGACGAAGAAGATGTTGCAAAGTTTACAGACGCTGTGAAGGAATTTGATAGCATGACGCAGCTGGATTCTTGGAAGACGACCCTTCTATTGAGAGTAAAGGAAGCACTGAAGGCTAAAGAGCTAGAGGAGGATGATCTCACTTAA

Network for GWHGAAZE003345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14938.7	SNAP	7	278	1.00E-111

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15296	NAPA, SNAPA, SEC17	Autophagy - yeast	map04138
K15296	NAPA, SNAPA, SEC17	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.216
	SRR3591706	second leaf	24.546
	SRR3591707	mature leaf	11.491
	SRR3591708	Shoot apex	26.427
	SRR3591709	Stem	58.173
	SRR3591710	White floral bud	67.266
	SRR3591711	White flower	29.115
	SRR3591712	Green floral bud	84.318
	SRR3591713	Yellow flower	16.297
SRP173429	SRR8316895	Juvenile bud stage	26.423
	SRR8316896	Juvenile bud stage	50.813
	SRR8316897	Juvenile bud stage	20.877
	SRR8316894	Third green stage	22.690
	SRR8316900	Third green stage	85.581
	SRR8316901	Third green stage	76.071
	SRR8316898	Complete white stage	46.387
	SRR8316899	Complete white stage	122.838
	SRR8316903	Complete white stage	64.643
	SRR8316902	Silver flowering stage	21.213
	SRR8316904	Silver flowering stage	31.728
	SRR8316905	Silver flowering stage	12.894
	SRR8316906	Gold flowering stage	21.730
	SRR8316907	Gold flowering stage	25.362
	SRR8316908	Gold flowering stage	20.722
SRP132670	SRR6706286	Control	97.270
	SRR6706287	Light intensity 50%	104.400
	SRR6706288	Light intensity 20%	117.434
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.346
	CNS0095593	Slightly white alabastrum(diploid) 2	62.490
	CNS0095594	Slightly white alabastrum(diploid) 3	57.199
	CNS0095595	Whole white alabastrum(diploid) 2	66.226
	CNS0095596	Whole white alabastrum(diploid) 3	79.904
	CNS0095597	Whole white alabastrum(diploid) 4	72.659
	CNS0095598	Silvery flower (diploied) 1	25.302
	CNS0095599	Silvery flower (diploied) 2	33.028
	CNS0095600	Silvery flower (diploied) 3	60.719
	CNS0095601	Golden flower (diploid) 1	25.817
	CNS0095602	Golden flower (diploid) 2	30.830
	CNS0095603	Golden flower (diploid) 3	33.435
	CNS0095604	Slightly white alabastrum(tetraploid) 1	63.310
	CNS0095605	Slightly white alabastrum(tetraploid) 2	53.746
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	58.746
	CNS0095608	Whole white alabastrum(tetraploid) 2	58.821
	CNS0095609	Whole white alabastrum(tetraploid) 3	84.175
	CNS0095610	Silvery flower (tetraploid) 1	45.679
	CNS0095611	Silvery flower (tetraploid) 2	42.379
	CNS0095612	Silvery flower (tetraploid) 3	55.471
	CNS0095613	Golden flower (tetraploid) 1	21.304
	CNS0095614	Golden flower (tetraploid) 2	33.548
	CNS0095615	Golden flower (tetraploid) 3	16.414
CRA001975	CRR073297	Stem 1	37.847
	CRR073298	Stem 2	33.543
	CRR073299	Stem 3	37.836
	CRR073300	Leaf 1	64.953
	CRR073301	Leaf 2	63.928
	CRR073302	Leaf 3	76.992
	CRR073303	Juvenile bud 1	99.993
	CRR073304	Juvenile bud 2	107.044
	CRR073305	Juvenile bud 3	78.132
	CRR073306	Third green 1	51.729
	CRR073307	Third green 2	70.153
	CRR073308	Third green 3	60.837
	CRR073309	Second white 1	14.774
	CRR073310	Second white 2	24.476
	CRR073311	Second white 3	9.868
	CRR073312	Silver flowering 1	6.898
	CRR073313	Silver flowering 2	2.347
	CRR073314	Silver flowering 3	4.732
	CRR073315	Gold flowering 1	9.855
	CRR073316	Gold flowering 2	17.478
	CRR073317	Gold flowering 3	8.462
	CRR073318	Tawny withering 1	57.586
	CRR073319	Tawny withering 2	44.362
	CRR073320	Tawny withering 3	66.148