Gene detail

Detail information of GWHGAAZE003378

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009620752.1	1.0196E-163	PREDICTED: transcription elongation factor S-II-like [Nicotiana tomentosiformis]
COG	YP_008796908.1	0.000003	DNA-directed RNA polymerase subunit M
trEMBL	tr\|K4C1Q0\|K4C1Q0_SOLLC	2E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc05g052190.2.1}
TAIR10	AT2G38560.1	3E-94	transcript elongation factor IIS

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96856267	96858363	+
GWHAAZE00000001	mRNA	96856267	96858363	+
GWHAAZE00000001	exon	96856267	96856428	+
GWHAAZE00000001	exon	96857413	96858363	+
GWHAAZE00000001	CDS	96856267	96856428	+
GWHAAZE00000001	CDS	96857413	96858363	+

Transcript Sequence
>GWHTAAZE003384 ATGATGGAAAGGGAGCTGATAGAGCTTTTCGAAGCGGTGAAGAAAGCTGCGGATGCAGCCGTCGCTGACGGTGGATCATCGCCAGAGGAAGATCGATGTATCGATGCGTTGAACCAGCTGCAGAAGTTTCCCGTTAATTATCAGATTCTTGTCTCCACCCAGGTAGGGAAACGTCTCAGACATCTGACAAAACATCCTAGAAAAAAAATTCAGGCTTTGGCTTCCCATTTGATTGATATGTGGAAGAATGTAATTGTTGAAGAAACAACGAAAAATAAGAAGAATGGGAACTCGGACACTAAGAATTCTGTAAAATCTGAGTCTGTGGGCACAGAGTGTTCTGATGGCAATGGCAAGAGGGTTCAGAGGGTAAATTCCATGAAGGTTGATATGGTTTCAAAGATTGAGAAAAATGATCACAGTACCACAAAGACAATTAAGACCGAAATTCATACATCTGAGAAGACTTTTAAGACTGAACAGAAAACTACCGGAGAATTCATCAAAGTTGAGAAGGTAACTAAAGAGGAAAAGCAAAATTCTGATGTCAGGAAACCAGCGCCTCCTCCAAAGCTGGGTTCTGTTATATATTGTAAGGATGCCTTGAGGGACAAAATCCGGGAACTTCTTTCAGAAGCCTTACTCAAAGTTTATAATGAGATTGATGAGGAGTTAAGAGGTGAAGCGGATGCATGTGATCCTTACCGAGTTGCTGTTTCGTTGGAGTCTGCAATGTTTGACAAGTGGGGCAAATCTAACGGTGCTCATAAGTTCAAATATAGGTCCATAATGTTCAATATCAGAGACGCACAAAACCCGGATTTCCGAAGAAAAGTTCTACTTGGCCATGTGAAGCCAATGAGGGTTCTCGAGATGCCTCCCGAAGAAATGGCAAGCAATGAAAGGCAGATGCAGAATGGAAAGATTAAAGAGAAAAAGTTATTTGACTGTGAGCGTGGAGGCCCGCCAAAGGCTACTACTGATCAGTTCAAGTGTGGTCGTTGTGGAAAGAAACAGTGCACTTACTACCAGATGCAGACTCGGAGTGCTGATGAACCGATGACCACATTTGTGACATGTGTAAACTGCGATAATCATTGGAAGTTCTGTTAA

Network for GWHGAAZE003378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.12	Med26	36	84	3.80E-10
PF07500.15	TFIIS_M	200	316	3.90E-28
PF01096.19	TFIIS_C	330	368	2.80E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.250
	SRR3591706	second leaf	0.869
	SRR3591707	mature leaf	0.502
	SRR3591708	Shoot apex	0.832
	SRR3591709	Stem	0.788
	SRR3591710	White floral bud	0.976
	SRR3591711	White flower	0.132
	SRR3591712	Green floral bud	6.774
	SRR3591713	Yellow flower	0.531
SRP173429	SRR8316895	Juvenile bud stage	4.586
	SRR8316896	Juvenile bud stage	11.987
	SRR8316897	Juvenile bud stage	5.093
	SRR8316894	Third green stage	3.162
	SRR8316900	Third green stage	4.720
	SRR8316901	Third green stage	5.401
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	0.827
	SRR8316903	Complete white stage	0.150
	SRR8316902	Silver flowering stage	0.334
	SRR8316904	Silver flowering stage	0.433
	SRR8316905	Silver flowering stage	0.175
	SRR8316906	Gold flowering stage	1.487
	SRR8316907	Gold flowering stage	1.638
	SRR8316908	Gold flowering stage	0.852
SRP132670	SRR6706286	Control	2.481
	SRR6706287	Light intensity 50%	1.998
	SRR6706288	Light intensity 20%	1.835
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.398
	CNS0095593	Slightly white alabastrum(diploid) 2	7.426
	CNS0095594	Slightly white alabastrum(diploid) 3	12.271
	CNS0095595	Whole white alabastrum(diploid) 2	4.993
	CNS0095596	Whole white alabastrum(diploid) 3	8.580
	CNS0095597	Whole white alabastrum(diploid) 4	5.768
	CNS0095598	Silvery flower (diploied) 1	1.171
	CNS0095599	Silvery flower (diploied) 2	0.411
	CNS0095600	Silvery flower (diploied) 3	0.569
	CNS0095601	Golden flower (diploid) 1	1.174
	CNS0095602	Golden flower (diploid) 2	0.731
	CNS0095603	Golden flower (diploid) 3	0.959
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.497
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.407
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.571
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.593
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.469
	CNS0095610	Silvery flower (tetraploid) 1	1.115
	CNS0095611	Silvery flower (tetraploid) 2	1.482
	CNS0095612	Silvery flower (tetraploid) 3	2.665
	CNS0095613	Golden flower (tetraploid) 1	1.404
	CNS0095614	Golden flower (tetraploid) 2	1.877
	CNS0095615	Golden flower (tetraploid) 3	3.350
CRA001975	CRR073297	Stem 1	5.572
	CRR073298	Stem 2	4.631
	CRR073299	Stem 3	3.373
	CRR073300	Leaf 1	2.188
	CRR073301	Leaf 2	2.490
	CRR073302	Leaf 3	1.630
	CRR073303	Juvenile bud 1	1.323
	CRR073304	Juvenile bud 2	1.488
	CRR073305	Juvenile bud 3	0.527
	CRR073306	Third green 1	0.944
	CRR073307	Third green 2	0.676
	CRR073308	Third green 3	1.059
	CRR073309	Second white 1	1.486
	CRR073310	Second white 2	1.656
	CRR073311	Second white 3	1.948
	CRR073312	Silver flowering 1	2.179
	CRR073313	Silver flowering 2	1.024
	CRR073314	Silver flowering 3	1.601
	CRR073315	Gold flowering 1	0.726
	CRR073316	Gold flowering 2	0.188
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.291
	CRR073319	Tawny withering 2	1.320
	CRR073320	Tawny withering 3	1.312