Gene detail

Detail information of GWHGAAZE003381

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG20572.1	6.2714E-143	Pheophorbidase [Gossypium arboreum]
COG	YP_004689491.1	1E-26	hypothetical protein RLO149_c005000
Swissprot	tr\|Q9SG92\|MES17_ARATH	5E-124	Methylesterase 17
trEMBL	tr\|B9N1T8\|B9N1T8_POPTR	8E-143	Hydrolase family protein {ECO:0000313\|EMBL:EEE99998.2}
TAIR10	AT3G10870.1	2E-99	methyl esterase 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96910063	96913861	+
GWHAAZE00000001	mRNA	96910063	96913861	+
GWHAAZE00000001	exon	96910063	96910278	+
GWHAAZE00000001	exon	96910394	96910534	+
GWHAAZE00000001	exon	96913291	96913425	+
GWHAAZE00000001	exon	96913586	96913861	+
GWHAAZE00000001	CDS	96910063	96910278	+
GWHAAZE00000001	CDS	96910394	96910534	+
GWHAAZE00000001	CDS	96913291	96913425	+
GWHAAZE00000001	CDS	96913586	96913861	+

Transcript Sequence
>GWHTAAZE003387 GCACACTTTGTGCTAATACATGGGATAGGTGGAGGAAGCTGGTGCTGGTACAAACTGAGATGCCTCATGGAGAACTCCGGCCACAAGGTCTCCTCTCTTGACCTCAAAAGCTCCGGCATCGACCGATCCGATGCCAACACCATTCTCTCTTTCGATGACTACAACAAACCTCTCATGGACTTCATGTCTTCCTTACCCCATGACGAAAAGGCCGGTGTAATTTTGGTGGGGCATAGTGCTGGAGGACTAAGTGTGACAGCAGCAACTCATAAATTTGCAAGGAAGATCAGCCTGGCTGTTTATATAGGAGCAACCATGCTCAAAAACGGGTTGGAGACTGAACAGGATTTTAAAGATGGCGAACCAGATTTATCTGAATTTGGAGATGTTTACGAAATTGGGTTTGGAATGGGACCTGATCAACCCCCAACCAGCCTCCTTATCAAGAAAGAATTCCAACGCAAAATCATTTACCATATGAGCCCTCAAGAGGATTCTACATTAGCAGCAATGCTTTTAAGGCCAGGGCCAATTCTGGCATTACGAACGGCTCAATTTACTGAAGGGAATGATGATGCAGACAAAGTGCCTCGCGTGTACATAAAAACGGAGTACGATCGAGTGGTGAAACCGGAGCAACAAGAGGCAATGATCAACCGGTGGCCTCCATCAAGCGTCTACAACCTGGAAAGTGATCACAGCCCATTTTTCTCCACCCCATTTGTGCTCTTTGGCTTGTTAGTTAGGGCTGCTGCTTCTACTGTATAG

Network for GWHGAAZE003381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0017

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12697.8	Abhydrolase_6	3	240	2.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.415
	SRR3591706	second leaf	5.796
	SRR3591707	mature leaf	4.602
	SRR3591708	Shoot apex	19.927
	SRR3591709	Stem	107.969
	SRR3591710	White floral bud	3.453
	SRR3591711	White flower	14.235
	SRR3591712	Green floral bud	3.019
	SRR3591713	Yellow flower	122.507
SRP173429	SRR8316895	Juvenile bud stage	25.039
	SRR8316896	Juvenile bud stage	20.304
	SRR8316897	Juvenile bud stage	10.471
	SRR8316894	Third green stage	3.647
	SRR8316900	Third green stage	9.418
	SRR8316901	Third green stage	7.906
	SRR8316898	Complete white stage	35.256
	SRR8316899	Complete white stage	27.500
	SRR8316903	Complete white stage	32.955
	SRR8316902	Silver flowering stage	79.172
	SRR8316904	Silver flowering stage	86.372
	SRR8316905	Silver flowering stage	35.109
	SRR8316906	Gold flowering stage	140.142
	SRR8316907	Gold flowering stage	110.865
	SRR8316908	Gold flowering stage	173.100
SRP132670	SRR6706286	Control	11.160
	SRR6706287	Light intensity 50%	10.372
	SRR6706288	Light intensity 20%	8.873
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.667
	CNS0095593	Slightly white alabastrum(diploid) 2	22.711
	CNS0095594	Slightly white alabastrum(diploid) 3	24.831
	CNS0095595	Whole white alabastrum(diploid) 2	13.759
	CNS0095596	Whole white alabastrum(diploid) 3	8.465
	CNS0095597	Whole white alabastrum(diploid) 4	6.167
	CNS0095598	Silvery flower (diploied) 1	180.006
	CNS0095599	Silvery flower (diploied) 2	163.456
	CNS0095600	Silvery flower (diploied) 3	173.817
	CNS0095601	Golden flower (diploid) 1	223.508
	CNS0095602	Golden flower (diploid) 2	395.861
	CNS0095603	Golden flower (diploid) 3	371.351
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.804
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.685
	CNS0095606	Slightly white alabastrum(tetraploid) 3	35.670
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.813
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.919
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.784
	CNS0095610	Silvery flower (tetraploid) 1	155.498
	CNS0095611	Silvery flower (tetraploid) 2	126.805
	CNS0095612	Silvery flower (tetraploid) 3	52.912
	CNS0095613	Golden flower (tetraploid) 1	891.250
	CNS0095614	Golden flower (tetraploid) 2	426.105
	CNS0095615	Golden flower (tetraploid) 3	579.162
CRA001975	CRR073297	Stem 1	31.131
	CRR073298	Stem 2	24.789
	CRR073299	Stem 3	53.711
	CRR073300	Leaf 1	12.938
	CRR073301	Leaf 2	15.784
	CRR073302	Leaf 3	11.708
	CRR073303	Juvenile bud 1	12.958
	CRR073304	Juvenile bud 2	11.387
	CRR073305	Juvenile bud 3	41.103
	CRR073306	Third green 1	36.384
	CRR073307	Third green 2	55.150
	CRR073308	Third green 3	57.184
	CRR073309	Second white 1	34.824
	CRR073310	Second white 2	63.054
	CRR073311	Second white 3	77.888
	CRR073312	Silver flowering 1	199.696
	CRR073313	Silver flowering 2	169.205
	CRR073314	Silver flowering 3	224.055
	CRR073315	Gold flowering 1	29.579
	CRR073316	Gold flowering 2	36.658
	CRR073317	Gold flowering 3	23.121
	CRR073318	Tawny withering 1	184.293
	CRR073319	Tawny withering 2	176.748
	CRR073320	Tawny withering 3	102.515