Gene detail

Detail information of GWHGAAZE003386

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006358159.1	0	PREDICTED: RING finger and transmembrane domain-containing protein 2-like [Solanum tuberosum]
Swissprot	tr\|Q6NPT7\|HRD1B_ARATH	5E-12	ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305}
trEMBL	tr\|K4BIW9\|K4BIW9_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g095450.2.1}
TAIR10	AT5G01960.1	4E-162	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000001	gene	96978878	96984042	+
GWHAAZE00000001	mRNA	96978878	96984042	+
GWHAAZE00000001	exon	96978878	96979430	+
GWHAAZE00000001	exon	96981141	96981217	+
GWHAAZE00000001	exon	96981338	96981506	+
GWHAAZE00000001	exon	96982007	96982095	+
GWHAAZE00000001	exon	96982199	96982363	+
GWHAAZE00000001	exon	96982455	96982532	+
GWHAAZE00000001	exon	96983429	96983532	+
GWHAAZE00000001	exon	96983712	96984042	+
GWHAAZE00000001	CDS	96978878	96979430	+
GWHAAZE00000001	CDS	96981141	96981217	+
GWHAAZE00000001	CDS	96981338	96981506	+
GWHAAZE00000001	CDS	96982007	96982095	+
GWHAAZE00000001	CDS	96982199	96982363	+
GWHAAZE00000001	CDS	96982455	96982532	+
GWHAAZE00000001	CDS	96983429	96983532	+
GWHAAZE00000001	CDS	96983712	96983817	+
GWHAAZE00000001	three_prime_UTR	96983818	96984042	+

Transcript Sequence
>GWHTAAZE003392 ATGGAAACGTCAAGTGCTACAAATTCCGATACGTACCTAAACTCTGGGTCATCTTCCCCATCAAGTAGTAGCAATTCCAGAAGATACGGAGTTCAATTTCCTCTACTGCGCTTCTTTCAGGCACCGGTATCGACTGTCTTGGAATACTCCGGCATTCTCCGTCCTCGCTCGAACGATCACGAAACGGAGAGCCTCGTAACCGATCGTTCGAATGGTGAAACTAGTAATATTAGTGGTGCTGGTGAGGTTTCGATACGGATAATCGGTGCCGGTGAGCAAGACCGTCAAGCCGGTGATCGGTACGAGGGTAATGATGACCAGATTGGTGGATCGATTGGAGCGGAGTTGGCTGATGGTGGTGATGTAGGTGAAGTTGAGGGTGGAGATAGGGTTTCTACTGCACAGGGGGTTGTTGATGATGATGGGAGTGGTAGTAATAATAGGGATAATTCTTACCAGAGGTATGATATACAGCAGGTTGCCAGGTGGATCGAGCAGATTCTTCCTTTCTCACTGCTCTTGTTGGTTGTATTCATTCGCCAGCACTTGCAAGGTTTCTTTGTCACAATTTATATCACTGCTTTCATGTTCAAGTCAAATGATATTCTTCGAAAACAGACAGCTCTAAAGGGGGAGAGAAAATTATCAGTTCTTGTTGGCTATTTTATAGTTTTTGTGCTTCATGTGATTGGAGTCTACTTGTGGTATCGGAATGATGATCTTTTCTACCCGTTATTCATGGTTCCTCCAAAAGCAATACCACCATTCTGGCATGCAATATTCACCATATTGGTAAATGATACAATGGTGAGGCAAGCAGCGATGGCATTGAAGTTGGTGCTGCTAATGTATTATAAGAATGGCAGGGGCCATAATTTCCGTAGACAGGGTCAAATGCTCACTCTGATTGAGTACACCCTGATTTTGTATCGTGCTTTGTTACCAACATCAGTCTGGTATCGGTTTTTCTTGAATAAAGAGTATGGTAGCCTCTTCTCATCACTGACTACAGGGTTATACTTAACTTTCAAGCTTACTTCAGTTGTTGGGAAGGTCAAATCCTTCTTTGCTGCCTTGAAGGCTTTATCACGAAAGGAAGTTCATTATGGGTCTCATGCAACATCTGAACAGGTAAATGCATCAGGAGACCTCTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATTTTACTGCGTTGTAAACACATCTTCTGCGAGGACTGTGTTTCAGAATGGTTTGAGAGAGAAAGAACTTGCCCTTTATGCAGGGCCTTGGTTAGACCTGCTGATTTGCGATCGTTTGGGGATGGGTCAACAAGCCTATTCTTTCAGTTATTCTGAAATTCTGTTTGCTGTTCCAAACCATATATTTCTCTCATAGCAGAGTTCATCTGCAGAAGAAGTTAGTTCCATGCTGGTTTCTCTAAAATGTATGGTATGATGAGAAATGCGTATAGGTCACCATATATATTGCATTGAGAGTTCTAATCTTTTACTCTATATCCTATGGTCTGAGAGGTATTTGCAAGTTGCTTATGAAATGTAAAACATCTTTGGCATCCATCC

Network for GWHGAAZE003386

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.7	zf-C3HC4_3	383	425	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.180
	SRR3591706	second leaf	25.328
	SRR3591707	mature leaf	32.365
	SRR3591708	Shoot apex	30.693
	SRR3591709	Stem	80.952
	SRR3591710	White floral bud	44.656
	SRR3591711	White flower	48.780
	SRR3591712	Green floral bud	38.497
	SRR3591713	Yellow flower	51.102
SRP173429	SRR8316895	Juvenile bud stage	32.623
	SRR8316896	Juvenile bud stage	49.727
	SRR8316897	Juvenile bud stage	28.833
	SRR8316894	Third green stage	19.497
	SRR8316900	Third green stage	38.625
	SRR8316901	Third green stage	41.608
	SRR8316898	Complete white stage	19.497
	SRR8316899	Complete white stage	52.260
	SRR8316903	Complete white stage	34.992
	SRR8316902	Silver flowering stage	27.216
	SRR8316904	Silver flowering stage	41.188
	SRR8316905	Silver flowering stage	18.504
	SRR8316906	Gold flowering stage	74.103
	SRR8316907	Gold flowering stage	67.114
	SRR8316908	Gold flowering stage	73.717
SRP132670	SRR6706286	Control	29.474
	SRR6706287	Light intensity 50%	33.954
	SRR6706288	Light intensity 20%	30.640
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.741
	CNS0095593	Slightly white alabastrum(diploid) 2	41.910
	CNS0095594	Slightly white alabastrum(diploid) 3	48.078
	CNS0095595	Whole white alabastrum(diploid) 2	38.939
	CNS0095596	Whole white alabastrum(diploid) 3	32.862
	CNS0095597	Whole white alabastrum(diploid) 4	38.934
	CNS0095598	Silvery flower (diploied) 1	52.101
	CNS0095599	Silvery flower (diploied) 2	48.241
	CNS0095600	Silvery flower (diploied) 3	35.343
	CNS0095601	Golden flower (diploid) 1	54.413
	CNS0095602	Golden flower (diploid) 2	48.973
	CNS0095603	Golden flower (diploid) 3	46.985
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.689
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.508
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.383
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.502
	CNS0095610	Silvery flower (tetraploid) 1	40.033
	CNS0095611	Silvery flower (tetraploid) 2	30.965
	CNS0095612	Silvery flower (tetraploid) 3	33.545
	CNS0095613	Golden flower (tetraploid) 1	33.728
	CNS0095614	Golden flower (tetraploid) 2	39.818
	CNS0095615	Golden flower (tetraploid) 3	41.280
CRA001975	CRR073297	Stem 1	27.300
	CRR073298	Stem 2	25.354
	CRR073299	Stem 3	13.688
	CRR073300	Leaf 1	32.757
	CRR073301	Leaf 2	30.743
	CRR073302	Leaf 3	12.321
	CRR073303	Juvenile bud 1	15.113
	CRR073304	Juvenile bud 2	10.417
	CRR073305	Juvenile bud 3	21.260
	CRR073306	Third green 1	10.293
	CRR073307	Third green 2	8.723
	CRR073308	Third green 3	8.080
	CRR073309	Second white 1	14.048
	CRR073310	Second white 2	15.756
	CRR073311	Second white 3	15.349
	CRR073312	Silver flowering 1	13.576
	CRR073313	Silver flowering 2	13.510
	CRR073314	Silver flowering 3	12.511
	CRR073315	Gold flowering 1	9.258
	CRR073316	Gold flowering 2	12.252
	CRR073317	Gold flowering 3	7.591
	CRR073318	Tawny withering 1	21.696
	CRR073319	Tawny withering 2	36.402
	CRR073320	Tawny withering 3	20.875