Detail information of GWHGAAZE003393


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010658299.10PREDICTED: SET and MYND domain-containing protein 4 isoform X1 [Vitis vinifera]
COGYP_007128263.10.00000004Tetratricopeptide TPR_1 repeat-containing protein
Swissprottr|Q84JR9|TTL4_ARATH1E-12TPR repeat-containing thioredoxin TTL4
trEMBLtr|W9SC65|W9SC65_9ROSA0SET and MYND domain-containing protein 4 {ECO:0000313|EMBL:EXC21093.1}
TAIR10AT1G33400.10Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000001gene9710435597112346-
GWHAAZE00000001mRNA9710435597112346-
GWHAAZE00000001exon9711221897112346-
GWHAAZE00000001exon9711197897112112-
GWHAAZE00000001exon9711157697111662-
GWHAAZE00000001exon9711110397111174-
GWHAAZE00000001exon9711068097110945-
GWHAAZE00000001exon9711039797110529-
GWHAAZE00000001exon9710989097110282-
GWHAAZE00000001exon9710966897109802-
GWHAAZE00000001exon9710918697109323-
GWHAAZE00000001exon9710882997108984-
GWHAAZE00000001exon9710834597108584-
GWHAAZE00000001exon9710793597108101-
GWHAAZE00000001exon9710731497107428-
GWHAAZE00000001exon9710701197107091-
GWHAAZE00000001exon9710435597104579-
GWHAAZE00000001CDS9711221897112346-
GWHAAZE00000001CDS9711197897112112-
GWHAAZE00000001CDS9711157697111662-
GWHAAZE00000001CDS9711110397111174-
GWHAAZE00000001CDS9711068097110945-
GWHAAZE00000001CDS9711039797110529-
GWHAAZE00000001CDS9710989097110282-
GWHAAZE00000001CDS9710966897109802-
GWHAAZE00000001CDS9710918697109323-
GWHAAZE00000001CDS9710882997108984-
GWHAAZE00000001CDS9710834597108584-
GWHAAZE00000001CDS9710793597108101-
GWHAAZE00000001CDS9710731497107428-
GWHAAZE00000001CDS9710701197107091-
GWHAAZE00000001CDS9710435597104579-
Transcript Sequence

Network for GWHGAAZE003393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01753.19zf-MYND2853167.70E-05
PF00856.29SET4945460.00012
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySET

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.059
SRR3591706second leaf3.711
SRR3591707mature leaf6.229
SRR3591708Shoot apex5.996
SRR3591709Stem5.697
SRR3591710White floral bud5.604
SRR3591711White flower6.383
SRR3591712Green floral bud5.534
SRR3591713Yellow flower5.346
SRP173429 SRR8316895Juvenile bud stage 3.197
SRR8316896Juvenile bud stage 3.901
SRR8316897Juvenile bud stage 1.847
SRR8316894Third green stage 1.904
SRR8316900Third green stage 3.883
SRR8316901Third green stage 3.849
SRR8316898Complete white stage 1.696
SRR8316899Complete white stage 6.044
SRR8316903Complete white stage 3.838
SRR8316902Silver flowering stage1.771
SRR8316904Silver flowering stage3.997
SRR8316905Silver flowering stage1.422
SRR8316906Gold flowering stage 5.340
SRR8316907Gold flowering stage 4.554
SRR8316908Gold flowering stage 4.503
SRP132670SRR6706286Control3.509
SRR6706287Light intensity 50%3.123
SRR6706288Light intensity 20%3.138
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.512
CNS0095593Slightly white alabastrum(diploid) 21.624
CNS0095594Slightly white alabastrum(diploid) 32.040
CNS0095595Whole white alabastrum(diploid) 21.636
CNS0095596Whole white alabastrum(diploid) 31.594
CNS0095597Whole white alabastrum(diploid) 41.880
CNS0095598Silvery flower (diploied) 13.296
CNS0095599Silvery flower (diploied) 23.593
CNS0095600Silvery flower (diploied) 34.622
CNS0095601Golden flower (diploid) 14.118
CNS0095602Golden flower (diploid) 26.017
CNS0095603Golden flower (diploid) 35.394
CNS0095604Slightly white alabastrum(tetraploid) 13.463
CNS0095605Slightly white alabastrum(tetraploid) 22.740
CNS0095606Slightly white alabastrum(tetraploid) 34.697
CNS0095607Whole white alabastrum(tetraploid) 12.232
CNS0095608Whole white alabastrum(tetraploid) 22.116
CNS0095609Whole white alabastrum(tetraploid) 33.651
CNS0095610Silvery flower (tetraploid) 15.196
CNS0095611Silvery flower (tetraploid) 25.718
CNS0095612Silvery flower (tetraploid) 33.968
CNS0095613Golden flower (tetraploid) 12.757
CNS0095614Golden flower (tetraploid) 23.997
CNS0095615Golden flower (tetraploid) 33.789
CRA001975CRR073297Stem 15.138
CRR073298Stem 24.727
CRR073299Stem 33.400
CRR073300Leaf 14.802
CRR073301Leaf 23.743
CRR073302Leaf 33.681
CRR073303Juvenile bud 13.495
CRR073304Juvenile bud 22.744
CRR073305Juvenile bud 34.827
CRR073306Third green 11.171
CRR073307Third green 21.308
CRR073308Third green 31.295
CRR073309Second white 11.802
CRR073310Second white 21.712
CRR073311Second white 31.327
CRR073312Silver flowering 11.063
CRR073313Silver flowering 21.093
CRR073314Silver flowering 31.216
CRR073315Gold flowering 14.079
CRR073316Gold flowering 24.408
CRR073317Gold flowering 32.285
CRR073318Tawny withering 14.146
CRR073319Tawny withering 22.535
CRR073320Tawny withering 32.965